View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_8 (Length: 306)
Name: NF9531_low_8
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 19596435 - 19596159
Alignment:
| Q |
24 |
acatatatttttccgtcaaacgaatccacgcatataacatgaagtttaaaaatttaatcatctttat--gtgttgnnnnnnnngtgtttatcttaaaatt |
121 |
Q |
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| T |
19596435 |
acatatatttttccgtcaatcgaatccacgcatagagcatgaagtttaaaaatttgattatctttaaaagtgttgttttttt-gtgtttatcttaaagtt |
19596337 |
T |
|
| Q |
122 |
-agaaaatgttgtaataagagtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttc |
220 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19596336 |
tagaaaatgttgtaataacagtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccatgatggcttccaccactagcttc |
19596237 |
T |
|
| Q |
221 |
taaactggctcaatttgcatcatggataatcctaattccccaagccaagttataccctcccttaatccctatgcttct |
298 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19596236 |
taatctggctcaatttgcatcatggataatcctaattccccaagccaagttataccctcccttaatcccaatgcttct |
19596159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 19750961 - 19751239
Alignment:
| Q |
24 |
acatatatttttccgtcaaacgaatccacgcatataacatgaagtttaaaaatttaatcatctttatgtgttgnnnnnnnn----gtgtttatcttaaaa |
119 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
19750961 |
acatatatttttccgtcaatcgaatccacgcatataacatgaagtttaaaaaattaattatctttatgtgtttttttttttttttgtgtttatcttaaaa |
19751060 |
T |
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| Q |
120 |
tt-agaaaatgttgtaataagagtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagct |
218 |
Q |
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| T |
19751061 |
tttagaaaatgttgtaataacaatgatctataattagccaaaatattgccaaactcgtatttgttgtttgatgtatccatgata-cttccaccactagct |
19751159 |
T |
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| Q |
219 |
tctaaactggctcaatttgcatcatggataatcctaattccccaagccaagttataccctcccttaatccctatgcttct |
298 |
Q |
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| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19751160 |
tataatccggctcaatttgcacgatgggtaatcctaattccccaagccaagttataccctcccttaatcccaatgcttct |
19751239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 47432231 - 47432361
Alignment:
| Q |
144 |
atctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttctaaactggctcaatttgcatcat |
243 |
Q |
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|||||||| ||| || |||||||||||| | ||| |||||| ||| ||||||| ||| |||||||||||||||| || || || | ||||||| || |
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| T |
47432231 |
atctacaagtagacataatattgccaaaatttgattggttgttagatttatccatgatgtcttccaccactagcttgcaatctagcactatttgcactat |
47432330 |
T |
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| Q |
244 |
ggataatcctaattccccaagccaagttata |
274 |
Q |
| |
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|||||||||| |||||||||||||| |||| |
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| T |
47432331 |
tgataatcctagttccccaagccaagatata |
47432361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 294
Target Start/End: Complemental strand, 4097810 - 4097662
Alignment:
| Q |
146 |
ctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttctaaactggctcaatttgcatcatgg |
245 |
Q |
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|||||||||| || |||||||||||| | ||| ||||| ||| ||| ||| ||| | |||||||||| ||| || || |||| ||||||| ||| | |
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| T |
4097810 |
ctacaattagacataatattgccaaaattcgattgattgttagatttattcatgatgtcatccaccactaacttgcaatctagctctatttgcaccattg |
4097711 |
T |
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| Q |
246 |
ataatcctaattccccaagccaagttataccctcccttaatccctatgc |
294 |
Q |
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|||||| |||||||| || | ||| |||| |||||||||||||| |||| |
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| T |
4097710 |
ataatcataattcccaaaactaagatatagcctcccttaatcccaatgc |
4097662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 299
Target Start/End: Original strand, 9178927 - 9179086
Alignment:
| Q |
140 |
agtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttctaaactggctcaatttgca |
239 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||| ||||| | ||||||||| ||| |||||||||| ||||| || || ||||||||| || |
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| T |
9178927 |
agtgatctacaattaaccaacatattgccaaactcatattgattgttagttgtatccatgatgtcttccaccaccagcttacaatctagctcaatttaca |
9179026 |
T |
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| Q |
240 |
tcatggataatcctaattccccaagccaagttataccctcccttaatccctatgcttctc |
299 |
Q |
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||| ||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||| |
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| T |
9179027 |
ccattgataatcctaattccccaagccaagatataacctcccttgatcccaatgcttctc |
9179086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 294
Target Start/End: Original strand, 43391181 - 43391335
Alignment:
| Q |
140 |
agtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttctaaactggctcaatttgca |
239 |
Q |
| |
|
|||||||||||| ||| || |||||||||||| || ||| |||||| ||| ||||||||||| |||||||||||||||| ||| | ||||||||| || |
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| T |
43391181 |
agtgatctacaagtagacataatattgccaaaatctgattggttgttagatttatccataatgtcttccaccactagcttgtaatccagctcaatttaca |
43391280 |
T |
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| Q |
240 |
tcatggataatcctaattccccaagccaagttataccctcccttaatccctatgc |
294 |
Q |
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||| ||||||||| |||||||| ||||| |||| |||||||| |||| |||| |
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| T |
43391281 |
ccattaataatcctagttccccaaaccaagatatagtctcccttagtcccaatgc |
43391335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 288
Target Start/End: Original strand, 7119996 - 7120141
Alignment:
| Q |
143 |
gatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccataatggcttccaccactagcttctaaactggctcaatttgcatca |
242 |
Q |
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||||||||| ||| || |||||||||||| || ||| |||||| ||| ||||||| || |||||||||||||||| || |||||||||||| || |
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| T |
7119996 |
gatctacaagtagacataatattgccaaaatctgattagttgttagatttatccatcataccttccaccactagctttccttctagctcaatttgcacca |
7120095 |
T |
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| Q |
243 |
tggataatcctaattccccaagccaagttataccctcccttaatcc |
288 |
Q |
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| T |
7120096 |
ttgataatcctagttccccaagccaagatatagcttcccttaatcc |
7120141 |
T |
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