View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_high_1 (Length: 645)
Name: NF9532_high_1
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_high_1 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 45981264 - 45980632
Alignment:
| Q |
1 |
tcatgatataggtgaaacgtagaccaaacttttgcacttgctaaggaaaccgctaatgtgcatgtttcagtccttgccatttgtgcatacacttatcaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45981264 |
tcatgatataggtgaaacatagaccaaacttttgcacttgctaaggaaaccgttaatgtgcatgtttcagtccttgccagttgtgcatacacttatcaat |
45981165 |
T |
|
| Q |
101 |
agtctaagtcaagtctttgaataaatcttcttgcaatcagtacatgatgattaacttatcttgcatttgcagctttgcatacttannnnnnnagtacatg |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45981164 |
agtctaagtcaagtctttgaagaaatcttcttgcaatcagcacatgatgattaacttatcttgcatttgcagctttgcatacttatatttttagtacatg |
45981065 |
T |
|
| Q |
201 |
atgatttattggttaaagaaagtaaaccaaggccttaatactggtaaccatactatcactcataaacctcttggttctagcaccactaaaataaagtaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45981064 |
atgatttattggttaaagaaagtaaaccaaggccttaatactggtaaccatactatcactcataaacctcttggttctagcaccactaaaataaagtaaa |
45980965 |
T |
|
| Q |
301 |
atttgcgtaaaacaacaccctagatatttaatataagtccaacgatgtataggatcaagtgtaaatgacaaagaactaacaactcaacattaattaactt |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45980964 |
atttgcgaaaaacaacaccctagatatttaatataagtccaacgatgtataagatcaagtgtaaatgacaaagaactaacaactcaacattaattaactt |
45980865 |
T |
|
| Q |
401 |
aagaacctcaatacaatctacaaagtgattatacaacacaaagaccaatgaacagtgaccatgctcacttgagatcaaacattcaggaatttcttcgaag |
500 |
Q |
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| T |
45980864 |
aagaacctcaatacaatctacaaagtgattatacaacacaaagaccaatgagtagtgaccatgctcacttgagatcaaacattcaggaatttcttcgaag |
45980765 |
T |
|
| Q |
501 |
gcattcacaatgggcataaacatattaatgtgaagcatgtaaaacctattagt----atggtcaattttatctacaaaatattgtcaattaattaatttt |
596 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45980764 |
gcattcacaatggacataaacatattaatgtgaagcatgtaaaacctattagtatacatggccaattttatctacaaaatattgtcaattaattaatttt |
45980665 |
T |
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| Q |
597 |
agaacaagtagcaacaagtctcttactacaacc |
629 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45980664 |
agaacaagtagcaacaagtctcttactacaacc |
45980632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 45991910 - 45991840
Alignment:
| Q |
20 |
tagaccaaacttttgcacttgctaaggaaaccgctaatgtgcatgtttcagtccttgccatttgtgcatac |
90 |
Q |
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|||||||| || ||||||||||||||||| || ||| ||||||||||||||||||||||| ||| |||| |
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| T |
45991910 |
tagaccaacctcttgcacttgctaaggaacccactagcctgcatgtttcagtccttgccattggtgtatac |
45991840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 45222378 - 45222321
Alignment:
| Q |
572 |
aaaatattgtcaattaattaattttagaacaagtagcaacaagtctcttactacaacc |
629 |
Q |
| |
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||||||| | ||||||||| |||||||||||||||||| || ||||||||||| |||| |
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| T |
45222378 |
aaaatatggccaattaattgattttagaacaagtagcagcaggtctcttactagaacc |
45222321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 629
Target Start/End: Original strand, 4355526 - 4355583
Alignment:
| Q |
572 |
aaaatattgtcaattaattaattttagaacaagtagcaacaagtctcttactacaacc |
629 |
Q |
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||||||| | ||||||||| |||||||||||||||||| || ||||||||||| |||| |
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| T |
4355526 |
aaaatatggccaattaattgattttagaacaagtagcagcaggtctcttactagaacc |
4355583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 9310 - 9362
Alignment:
| Q |
572 |
aaaatattgtcaattaattaattttagaacaagtagcaacaagtctcttacta |
624 |
Q |
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||||||| | ||||||||| |||||||||||||||||| || |||| |||||| |
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| T |
9310 |
aaaatatggccaattaattgattttagaacaagtagcagcaggtcttttacta |
9362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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