View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_high_17 (Length: 227)
Name: NF9532_high_17
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_high_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38267935 - 38267709
Alignment:
| Q |
1 |
agagaactgattcttagactgtatagagagatcttcagataaagagtggttagtggtttcttcaggaatagaaccatttgaaggcatgcatgaagaatga |
100 |
Q |
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| T |
38267935 |
agagaactgattcttagactgtatagagagatcttcagataaagagtggttagtggtttcttcaggaatagaaccatttgaaggcatgcatgaagaatga |
38267836 |
T |
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| Q |
101 |
ggtggtgcaagagcttttgtgacttcaagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctcgggtagaggggtgtcgc |
200 |
Q |
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| T |
38267835 |
ggtggtgcaagagcttttgtgacttcaagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctccggtagaggggtgtcgc |
38267736 |
T |
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| Q |
201 |
cactcggaacaaattcaggacgcagac |
227 |
Q |
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| T |
38267735 |
cactcggaacaaattcaggacgcagac |
38267709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 38311594 - 38311524
Alignment:
| Q |
126 |
caagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctcgggtagaggggtg |
196 |
Q |
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| T |
38311594 |
caagaactgatgcactccatgaccttggcagaaactccataggaacttgaggaccctacggcagaggggtg |
38311524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 31709208 - 31709266
Alignment:
| Q |
125 |
tcaagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctc |
183 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||||| || | || ||||||||| |
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| T |
31709208 |
tcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctc |
31709266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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