View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_high_9 (Length: 278)
Name: NF9532_high_9
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 9565111 - 9564865
Alignment:
| Q |
19 |
agcatgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagattggtgctannnnnnnnctattgaa |
118 |
Q |
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| T |
9565111 |
agcatgaattttattttatgagtgagtatatttgagtgttcttttaaactgaatggtttcaaatacagtaggagattggtgctattttttttctattgaa |
9565012 |
T |
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| Q |
119 |
gttaaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtatgcctcattttcannnnnnnnn |
218 |
Q |
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| T |
9565011 |
gttaaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtatgcctcattttca--ttttttt |
9564914 |
T |
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| Q |
219 |
nnnnnnctggttctgagaattagaagaatgctgtatgtatttgagtatt |
267 |
Q |
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| T |
9564913 |
tttcttctggttctgagaattagaagaatgctgtatgtatttgagtatt |
9564865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 752070 - 751896
Alignment:
| Q |
22 |
atgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagattggtgctannnnnnnnctattgaagtt |
121 |
Q |
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| T |
752070 |
atgaattatattttaggagtgaggatattagagtgttcttttaaactgaatggtttcaaatacagtaggaaattggtgctattttttt-ctattgaagtt |
751972 |
T |
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| Q |
122 |
aaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtat |
197 |
Q |
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| T |
751971 |
aaattgcataattctccattgattatggaacgagtccagtgtgttgtactttcacttggttgttggctgcatgtat |
751896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 753856 - 753688
Alignment:
| Q |
22 |
atgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagattggtgctannnnnnnnctattgaagtt |
121 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
753856 |
atgaattttattttaagagtgaggatattagagtgttcttttaaa-----tggtttcaaatacagtaggagattggtgctatttttt--cagttgaagtt |
753764 |
T |
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| Q |
122 |
aaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtat |
197 |
Q |
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| T |
753763 |
aaattgcatgattctccattgattatggaacgagtccagtgtgttgtgctttcacttggttgttggctgcatgtat |
753688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 743864 - 743781
Alignment:
| Q |
114 |
ttgaagttaaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtat |
197 |
Q |
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| T |
743864 |
ttgaagttaaattgcatgattctccattgattatggaacgagtccagtgtgttgtactttcacttggttgttggctgcatgtat |
743781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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