View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_10 (Length: 478)

Name: NF9532_low_10
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_10
NF9532_low_10
[»] chr5 (6 HSPs)
chr5 (18-474)||(35142609-35143064)
chr5 (24-461)||(37164812-37165248)
chr5 (26-461)||(37132360-37132797)
chr5 (26-461)||(37139446-37139883)
chr5 (33-461)||(38749037-38749454)
chr5 (62-106)||(20759377-20759421)
[»] chr4 (3 HSPs)
chr4 (33-341)||(3022453-3022761)
chr4 (263-461)||(11242391-11242591)
chr4 (406-461)||(3022343-3022398)
[»] chr6 (5 HSPs)
chr6 (62-182)||(13863273-13863393)
chr6 (41-166)||(14014668-14014793)
chr6 (62-148)||(14022254-14022340)
chr6 (62-184)||(14109976-14110098)
chr6 (75-155)||(13893460-13893540)


Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 35143064 - 35142609
Alignment:
18 ctatttacaggagacattccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagaga 117  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
35143064 ctattgacaggagacattccggaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggggaaattacttcagaga 35142965  T
118 ttggaaggttaacatcacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35142964 ttggaaggttaacatcacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgtt 35142865  T
218 gaatgtgtccgataacaacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtggg 317  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
35142864 gaatgtgtccgataacaacctatctggaaaaattccaattagtacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcaatctttgtggg 35142765  T
318 aaaccacttgacaaaaaatgtccatatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttg 417  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
35142764 aaaccacttgaca-aaaatgtccatatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagataaaaaaaccaatttatttg 35142666  T
418 aatgtggcattgggatttatcacaggattttcgggactttggggctctctgcttctc 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
35142665 aatgtggcattgggatttatcacaggattttcgggactttggggctctttgtttctc 35142609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 24 - 461
Target Start/End: Original strand, 37164812 - 37165248
Alignment:
24 acaggagacattccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaa 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  ||||||||    
37164812 acaggagaccttccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgacaggggaaattacttcaatgattggaa 37164911  T
124 ggttaacatcacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgttgaatgt 223  Q
     ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||| ||| |    
37164912 agttaacatcacttgaatttcttgacttgtcaagaaaccatttcactggtttaattcctcattctctaactcaaattgatcgcctttccatgttaaatct 37165011  T
224 gtccgataacaacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaacca 323  Q
    |||| |||||||||| || |||| |||||||||||  || ||||| |||||||||||||| || |||||| |||| ||||  ||||||||||| ||||||    
37165012 gtccaataacaacctgtccggaagaattccaattggaacccagttacagagtttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaacca 37165111  T
324 cttgacaaaaaatgtccatatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttgaatgtg 423  Q
    |||||||||||||||||    || |||||||||| || ||||||||||||||||||| |||||||||||||||||       ||||||||||||| ||||    
37165112 cttgacaaaaaatgtcctagagatgaagttgcacctcagaaaccagaaacacatgaagaaagtagtcaagaagat-aaaaagccaatttatttgagtgtg 37165210  T
424 gcattgggatttatcacaggattttcgggactttgggg 461  Q
    ||||||||||||||||||||||||| ||| || |||||    
37165211 gcattgggatttatcacaggattttggggcctatgggg 37165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 26 - 461
Target Start/End: Original strand, 37132360 - 37132797
Alignment:
26 aggagacattccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaagg 125  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||| ||||  |||||||||||    
37132360 aggagacattccagaagaaataggaaacttgatagagttggtgtcattgaatttatcaagcaacaagttgacaggagaaatttcttcgaagattggaagg 37132459  T
126 ttaacatcacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgttgaatgtgt 225  Q
    |||||||||||||| | ||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||| ||||| | |||||||||||| |      
37132460 ttaacatcacttgattctcttgacttgtcaagaaaccatttatctggtccaattcctccttctctagctcaaattgatcgcgtgtccatgttgaatctag 37132559  T
226 ccgataacaacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaaccact 325  Q
    | |||||||| || ||||||| |||||||||||  |||||||| |||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||    
37132560 cggataacaatctctctggaagaattccaattggcacgcagttacagagtttcgatgcttcaagttatcaaggcaatgttgatctttgtgggaaaccact 37132659  T
326 tgacaaaaaatgtcc---atatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttgaatgt 422  Q
    ||| |||| ||||||   | ||||||||||||||||||  |||||||||||||||||| |||||||||||||||||       |||||||||||||  ||    
37132660 tgaaaaaatatgtccaggagatgaagaagttgcacatcataaaccagaaacacatgaagaaagtagtcaagaagat-aaaaagccaatttatttgagcgt 37132758  T
423 ggcattgggatttatcacaggattttcgggactttgggg 461  Q
    | |||||||||||||||||||||||| ||| || |||||    
37132759 gacattgggatttatcacaggattttggggcctatgggg 37132797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 26 - 461
Target Start/End: Original strand, 37139446 - 37139883
Alignment:
26 aggagacattccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaagg 125  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| ||||||| ||||| ||||||||| ||||  |||||||||||    
37139446 aggagacattccagaagaaatagaaaacttgatagagttggtgtcattgaatttatcatgcaacaagttgacaggagaaattccttcgaagattggaagg 37139545  T
126 ttaacatcacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgttgaatgtgt 225  Q
    |||| ||||||||| | ||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| ||||||| ||| |||||||| | |    
37139546 ttaatatcacttgattctcttgacttgtcaagaaaccatttctctggtccaattcctcctactctagctcaaattgatcgcctgtccgtgttgaatctat 37139645  T
226 ccgataacaacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaaccact 325  Q
    | |||||||| || ||||||| |||||||||||  |||||||| |||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||    
37139646 ctgataacaatctctctggaagaattccaattggcacgcagttacagagtttcgatgcttcaagttatcaaggcaatgttgatctttgtgggaaaccact 37139745  T
326 tgacaaaaaatgtcc---atatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttgaatgt 422  Q
     || |||| ||||||   | ||||||||||||||||||  |||||||||||||||||| |||| ||||||||||||       ||||||||||||  |||    
37139746 cgaaaaaatatgtccaggagatgaagaagttgcacatcataaaccagaaacacatgaagaaagaagtcaagaagat-aaaaaaccaatttatttgtgtgt 37139844  T
423 ggcattgggatttatcacaggattttcgggactttgggg 461  Q
    | ||||||||||||| || ||||||| ||| || |||||    
37139845 gacattgggatttatgactggattttggggcctatgggg 37139883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 33 - 461
Target Start/End: Original strand, 38749037 - 38749454
Alignment:
33 attccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacat 132  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
38749037 attccagaagaaataggaaacttgatagagttggtgtcgttgaatttatcaaacaacaatttgaatggagaaattacttcaaagattggaaggttaacat 38749136  T
133 cacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgttgaatgtgtccgataa 232  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||| || | || ||| |||||||| |||  |||||    
38749137 cacttgaatttcttgacttgtcacgaaaccatttctctggtttgattcctccttctctagctaaaattgattgtctgtccttgttgaatctgttggataa 38749236  T
233 caacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaaccacttgacaaa 332  Q
     || |  ||||||| |||||||||||  |||||||||||||||||| |||| || | |||| |||| ||||| |||||||||| ||||||||||||||||    
38749237 taatcggtctggaagaattccaattggcacgcagttgcagagtttcaatgcctcaaattatgaagggaatgttgatctttgtgagaaaccacttgacaaa 38749336  T
333 aaatgtccatatgaagaagttgcacatctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttgaatgtggcattggga 432  Q
    |||||||  || || |        |    ||||||||||||||  ||| ||||||||| |||||||       ||||||||||||| |||||||| ||||    
38749337 aaatgtc--taggagg--------cccgagaaaccagaaacaccagaagaaagtagtccagaagataaaaaa-ccaatttatttgagtgtggcatcggga 38749425  T
433 tttatcacaggattttcgggactttgggg 461  Q
    |||||||||||||||| |||||| |||||    
38749426 tttatcacaggattttggggactatgggg 38749454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 20759421 - 20759377
Alignment:
62 attggtgtcattgaatttatcaagcaacaatttgactggagaaat 106  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||    
20759421 attggtgtctttgaatttatcaaggaacaatttgagtggagaaat 20759377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 33 - 341
Target Start/End: Complemental strand, 3022761 - 3022453
Alignment:
33 attccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacat 132  Q
    |||||||||||||||||||||||||| |  |||||||| ||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||    
3022761 attccagaagaaataggaaacttgatggagttggtgtcgttgaatttatcaaacaacaatttgaatggaaaaattacttcaaagattggaaggttaacat 3022662  T
133 cacttgaatttcttgacttgtcaagaaacaatttctctggtttaattcctccttctctagctcaaatttatcgcctttccatgttgaatgtgtccgataa 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||  ||||| | ||| |||||||| |||| |||||    
3022661 cacttgaatttcttgacttgtcaagaaaccatttctctggtttgattccaccttctctagctcaaatagatcgcttgtccttgttgaatctgtcggataa 3022562  T
233 caacctatctggaaaaattccaattgctacgcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaaccacttgacaaa 332  Q
      | || ||||||| |||||||||||  |||||| ||||||||||| |||| || | |||| |||| ||||| |||||||||||||||||||||||||||    
3022561 ttatctctctggaagaattccaattggcacgcagctgcagagtttcaatgcctcaaattatgaagggaatgttgatctttgtgggaaaccacttgacaaa 3022462  T
333 aaatgtcca 341  Q
    | |||||||    
3022461 atatgtcca 3022453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 263 - 461
Target Start/End: Complemental strand, 11242591 - 11242391
Alignment:
263 gcagttgcagagtttcgatgcatcgagttataaaggtaatgtcgatctttgtgggaaaccacttgacaaaaaatgtc---catatgaagaagttgcacat 359  Q
    |||||||||||||||||| || || |||||| |||| ||||| ||||||| |||||||||||||||||| | |||||    | |||||||| |||||| |    
11242591 gcagttgcagagtttcgacgcctcaagttatgaaggaaatgttgatctttctgggaaaccacttgacaacatatgtcaagaagatgaagaaattgcacct 11242492  T
360 ctgaaaccagaaacacatgaacaaagtagtcaagaagatnnnnnnnccaatttatttgaatgtggcattgggatttatcacaggattttcgggactttgg 459  Q
    |  |||||||||||   |||| ||||||||| |||||||        |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||    
11242491 caaaaaccagaaacttttgaagaaagtagtccagaagatatgaatt-caatttatttgagtgtggcattaggatttattacaggattttggggcctttgg 11242393  T
460 gg 461  Q
    ||    
11242392 gg 11242391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 3022398 - 3022343
Alignment:
406 ccaatttatttgaatgtggcattgggatttatcacaggattttcgggactttgggg 461  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
3022398 ccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggg 3022343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 13863273 - 13863393
Alignment:
62 attggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacatcacttgaatttcttgacttgtcaagaaac 161  Q
    |||||| ||| | ||||||||||| ||||| ||||| ||  ||||| ||||| | || ||||||||||||||||||||||||||||| ||||||  ||||    
13863273 attggtctcactaaatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaggttaacatcacttgaatttcttgatttgtcacaaaac 13863372  T
162 aatttctctggtttaattcct 182  Q
    || || | ||||| |||||||    
13863373 aagttgtttggttcaattcct 13863393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 14014793 - 14014668
Alignment:
41 agaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacatcacttgaa 140  Q
    |||||||| ||| |||||   |||||| || ||||| |||||||| ||||| ||||| ||  ||||| ||||| | ||||||| | |||||||||||||     
14014793 agaaatagcaaatttgattcaattggtctcgttgaacttatcaagaaacaacttgacggggaaaattccttcaaatattggaaagctaacatcacttgac 14014694  T
141 tttcttgacttgtcaagaaacaattt 166  Q
    |||||||| || |||||||| |||||    
14014693 tttcttgatttctcaagaaataattt 14014668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 14022340 - 14022254
Alignment:
62 attggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacatcacttgaatttcttga 148  Q
    |||||| |||||||| |||||||| ||||| || || ||| ||||| ||||| | ||||||| | ||||||||||||| ||||||||    
14022340 attggtctcattgaacttatcaagaaacaacttcacaggaaaaattccttcaaatattggaaagctaacatcacttgactttcttga 14022254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 14110098 - 14109976
Alignment:
62 attggtgtcattgaatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacatcacttgaatttcttgacttgtcaagaaac 161  Q
    |||||| || ||||| |||||||| ||||| ||||| ||  ||||| ||||| | |||||||   ||||||||||||| |||||||| |||||| ||||     
14110098 attggtctcgttgaacttatcaagaaacaacttgacagggaaaattccttcaaatattggaaatctaacatcacttgactttcttgatttgtcacgaaat 14109999  T
162 aatttctctggtttaattcctcc 184  Q
    || || | ||||| |||||||||    
14109998 aacttgtttggttcaattcctcc 14109976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 13893460 - 13893540
Alignment:
75 aatttatcaagcaacaatttgactggagaaattacttcagagattggaaggttaacatcacttgaatttcttgacttgtca 155  Q
    ||||||||||| ||||| ||||| ||  ||||| ||||| | || ||||  |||||||||||||| |||||||| ||||||    
13893460 aatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaaattaacatcacttgactttcttgatttgtca 13893540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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