View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_11 (Length: 450)
Name: NF9532_low_11
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_11 |
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| [»] chr8 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 38299382 - 38299813
Alignment:
| Q |
19 |
cgtcacaccgtccgcgtcctctgcatcacggtaactctttcgttatttaagtttctttcnnnnnnnatgcaataacctgtgattttaatgctgaaatgta |
118 |
Q |
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| T |
38299382 |
cgtcacaccgtccgcgtcctctgcatcacggtaactctttcgttatttaagtttctttctttttttatgcaataacctgtgattttaatgctgaaatgta |
38299481 |
T |
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| Q |
119 |
ttaatctaggtcattgaagcaatgtcacaagaaaatatggaatccgattgcgcggtagatttactggactctgataacgagacaatggagcaaaagatat |
218 |
Q |
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| T |
38299482 |
ttaatctaggtcattgaagcaatgtcacaagaaaatatggaatccgattgcgaggtagatttactggactctgatgacgagacaatggagcaaaaggaat |
38299581 |
T |
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| Q |
219 |
cacggttagtaaaaacttgtgcatccatgatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggagtggttatg |
318 |
Q |
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| T |
38299582 |
cacggttagtaaaaacttgtgcatccatgatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggaatggttaag |
38299681 |
T |
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| Q |
319 |
tcaagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactatt |
418 |
Q |
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| T |
38299682 |
tcaagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactatt |
38299781 |
T |
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| Q |
419 |
cctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38299782 |
cctaataggatatctttaacttttgatctgtg |
38299813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 38320475 - 38320558
Alignment:
| Q |
367 |
ggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38320475 |
ggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaactgttgatctgtg |
38320558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 38305663 - 38305732
Alignment:
| Q |
381 |
aagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38305663 |
aagagaaactgaagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgtg |
38305732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 38316379 - 38316460
Alignment:
| Q |
369 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38316379 |
atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtg |
38316460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 38325251 - 38325305
Alignment:
| Q |
396 |
ttaaacaacagctggctactattcctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38325251 |
ttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgtg |
38325305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 38308385 - 38308459
Alignment:
| Q |
370 |
tttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttga |
444 |
Q |
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| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttga |
38308459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 38316160 - 38316201
Alignment:
| Q |
120 |
taatctaggtcattgaagcaatgtcacaagaaaatatggaat |
161 |
Q |
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| T |
38316160 |
taatctaggtcgtcgaagcaacgtcacaagaaaatatggaat |
38316201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 4583057 - 4582999
Alignment:
| Q |
105 |
aatgctgaaatgtattaatctaggtcattgaagcaatgtcacaagaaaatatggaatcc |
163 |
Q |
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| T |
4583057 |
aatgctgaaatgtattaatataggtcattgaagcaatgtcacaagaaaatatggaatcc |
4582999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 4583155 - 4583081
Alignment:
| Q |
33 |
cgtcctctgcatcacggtaactctttcgttatttaagtttctttcnnnnnnnatgcaataacctgtgattttaat |
107 |
Q |
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| T |
4583155 |
cgtcctctgcgtcacggtaactctttccttatttaagtttctgtctttttgaatgcaataacctgtgattttaat |
4583081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 38850966 - 38850885
Alignment:
| Q |
369 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtg |
450 |
Q |
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| T |
38850966 |
atttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtg |
38850885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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