View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_12 (Length: 446)
Name: NF9532_low_12
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38267576 - 38267331
Alignment:
| Q |
1 |
ggcagaaggaatgagatgatgttgaagtttaggctaactaaaggggcttagga---atggtcaatcaccactaaccatgtggtaaatatgtttttcttgt |
97 |
Q |
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| T |
38267576 |
ggcagaaggaatgagatgatgttgaagtttaggctaactaaaggggcttaggaggaatggtcaatcaccactaaccatgtggtaaatatgtttttcttgt |
38267477 |
T |
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| Q |
98 |
tcaaaagttcactttaatatataaatccacacttgtttttcctacttcagttcacatttacacgtgactgttataaaaaga--------aacatataatt |
189 |
Q |
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| T |
38267476 |
tcaaaagttcactttaaaatctaaatccacacttgtttttcctacttcagttcacatttacacgtgactgttataaaaagaaacaaaaaaacatataatt |
38267377 |
T |
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| Q |
190 |
gaatcatggaatggtcccactaaaatttggttatgagttcttttga |
235 |
Q |
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| T |
38267376 |
gaatcatggaatggtcccactaaaatttggttatgagttcttttga |
38267331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 38267037 - 38266903
Alignment:
| Q |
295 |
aaagaatctagtggaattctgcaattacccgcatcccaaaccatatacacaccaacacatagacatcttagtcaagagcaaacataattatgaacaagac |
394 |
Q |
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| T |
38267037 |
aaagaatctagtggaattctgcaattacccgcatcccaaaccatatacacaccaacacatagacatcttagtcaagagcaaacataattatgaacaagac |
38266938 |
T |
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| Q |
395 |
aaaaaggtagtaatgcattgcgggacagccaaatt |
429 |
Q |
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| T |
38266937 |
aaaaaggtagtaatgcattgcgggacagccaaatt |
38266903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 38267291 - 38267229
Alignment:
| Q |
235 |
attatatgttgtatgcattgggactgattcacatgacaatcttaggggacttaggagtataaa |
297 |
Q |
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| T |
38267291 |
attatatgttgtatgcattgggactgattcacatgacaatcttaggggacttaggagtataaa |
38267229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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