View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_14 (Length: 413)
Name: NF9532_low_14
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 35 - 404
Target Start/End: Complemental strand, 3050777 - 3050411
Alignment:
| Q |
35 |
tagtaattgataccaagaaatggcgacagatactacttcatgggcaattgtttctccaaaatcaatatannnnnnn-atcccaaaactaaatacattcat |
133 |
Q |
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| T |
3050777 |
tagtaattgataccaagaaatggcgacaaatactaattcatgggcaattgtttctccaaaatcaatattttttttttatcccaaaactaaatacattca- |
3050679 |
T |
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| Q |
134 |
tcaacgttgttatgagccttttaaatacgatgctccctgacttgatgtcattgtttgcaagaggaaaatgaccggtaccagaaccaatctgcactgaaat |
233 |
Q |
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| T |
3050678 |
---acgttgttatgagccttttaaatacgatgctccctgacttgatgtcattgtttgcaagaggaaaatgactggtaccagaacctatctgcactgaaat |
3050582 |
T |
|
| Q |
234 |
ttttgtcttgaagctctttttcagttttttctgcacacacctctgatttaatgagccatttgcacatgctaaggaaatagatctttctccatatcaataa |
333 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3050581 |
ttttgtcttgaagccctttttcagttttttctgcacacacctctgatttaatgagccatttgcacatgctaaggaaatagatctttctccatatcaataa |
3050482 |
T |
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| Q |
334 |
ttttcagatggaagaagtcgtgcccatttgcttttgacacttattgagtcatatctcaaacacaggttctg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |
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| T |
3050481 |
ttttcagatggaagaagtcgtgcccatttgcttttgacagttattgagtgatatctcaaacacagtttctg |
3050411 |
T |
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