View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_15 (Length: 408)
Name: NF9532_low_15
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 4977955 - 4978345
Alignment:
| Q |
18 |
atatgcttcaaactttgataactcttgagaattttttgttcggtccaattcctgaatctcttggtggttgtgaatcattgactcggattcgaatgggtga |
117 |
Q |
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| T |
4977955 |
atatgcttcaaactttgataactcttgggaattttttgttcggtccaattcctgaatctcttggtggttgtgaatcattgactcggattcgaatgggtga |
4978054 |
T |
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| Q |
118 |
taattttttgaatggttcaattcctaagggtttgtttggattaccaaaattgagtcaggttgagcttcaagataattatttatctggaaattttcctgag |
217 |
Q |
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| T |
4978055 |
aaattttttcaatggttcaattcctaagggtttgtttggattaccaaaattgagtcaggttgagcttcaagataattatttatctggaaattttcctgag |
4978154 |
T |
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| Q |
218 |
actcattctgtttctgttaatcttggtcagattactttgtcgaataatcaactctcaggtcctttgcctccttctattgggaatttttccggcgtgcaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4978155 |
actcattctgtttctgttaatcttggtcagattactttgtcgaataatcaactctcaggtcctttgcctccttctattgggaatttttcgggcgtgcaga |
4978254 |
T |
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| Q |
318 |
agcttctgcttgatggtaacatgtttgagggtaaaattccatctcagattggaaggttgcaacagctttcaaagattgattttagtcataa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4978255 |
agcttctgcttgatggtaacatgtttgagggtaaaattccatctcagattggaaggttgcaacagctttcaaagattgattttagtcataa |
4978345 |
T |
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