View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_18 (Length: 393)
Name: NF9532_low_18
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 380
Target Start/End: Complemental strand, 4122517 - 4122150
Alignment:
| Q |
14 |
agacaaaaaagaagaaaactctagtagatgaatgatgtgaaagaattgctggctaaaagtttctttgagttaatttaatctccaatttggttctgaaatt |
113 |
Q |
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| T |
4122517 |
agacaaaaaagaagaaaactctagtagatgaatgatgtgaaagaatttctggctaaaagtttctttgagttaatttaatctccaatttggttctgaaatt |
4122418 |
T |
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| Q |
114 |
gagcttgatttcgaagatccgaacctaatgctttaggaagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagactt-aaacaga |
212 |
Q |
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| T |
4122417 |
gagcttgatttcgaagatccgaacctaatgctttaggaagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaaacaga |
4122318 |
T |
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| Q |
213 |
acttgcagatggaaatcagccatgttttcaaagaaggcattcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggct |
312 |
Q |
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| T |
4122317 |
acttgcagatggaaatcagccatgttttcaaagaaggcattcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggct |
4122218 |
T |
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| Q |
313 |
atgtgagtctaatacatttcttcagttcacgcaatcaggtttgcagtctgatctttattgttgttatt |
380 |
Q |
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| T |
4122217 |
atgtgagtctaatacatttcttcaattcacgcaatcaggtttgcagtctgatctttattgttgttatt |
4122150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 220 - 369
Target Start/End: Complemental strand, 4119217 - 4119067
Alignment:
| Q |
220 |
gatggaaatcagccatgttttcaaagaaggcattcaaaatgaaaacaatcttg-caatcacagtatgtttcaagaagagtttatctatgtggctatgtga |
318 |
Q |
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| T |
4119217 |
gatgggaatcaaccatgttttcagagaaggcattcgaaatgaagacaatattggcaatcacagtatgcttcaagaagagttcagatatgtgactatgtga |
4119118 |
T |
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| Q |
319 |
gtctaatacatttcttcagttcacgcaatcaggtttgcagtctgatcttta |
369 |
Q |
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| T |
4119117 |
atctaatacatttcttctgttctcccagtcaggtttgcagtctgatcttta |
4119067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 4132029 - 4131920
Alignment:
| Q |
151 |
aagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaacagaacttgcagatggaaatcagccatgttttcaaagaaggc |
250 |
Q |
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| T |
4132029 |
aagataaggaaaccaggatacttgatgattgatcaactaaattaattgtatacttaaacagaatttgcaaatggaaatcagccatgttttaagtgaaagc |
4131930 |
T |
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| Q |
251 |
attcaaaatg |
260 |
Q |
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| T |
4131929 |
attcaaaatg |
4131920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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