View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9532_low_19 (Length: 390)
Name: NF9532_low_19
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 8958638 - 8958280
Alignment:
| Q |
20 |
aacctgagtaatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccatta |
119 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
8958638 |
aacctgagtaatgctagaaacataaactgtttctccctcaccaacattggtaattgttctatgaaattcttgggttgtccttgaagaagaattcccatta |
8958539 |
T |
|
| Q |
120 |
ttgaagaatgcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagt |
219 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8958538 |
tcgaagaatgcaataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagt |
8958439 |
T |
|
| Q |
220 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
319 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958438 |
agctaagtgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaa |
8958339 |
T |
|
| Q |
320 |
tgcaaaaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtat |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958338 |
tgcaaaaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtat |
8958280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 8945440 - 8945790
Alignment:
| Q |
28 |
taatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaagaa |
127 |
Q |
| |
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||||||||| ||||||||| | || ||||||||||||||| ||||||||||| |||||||||| | | | ||||||||||||||||||| |||||| || |
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| T |
8945440 |
taatgctagcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaa |
8945539 |
T |
|
| Q |
128 |
tgcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagttaagt |
227 |
Q |
| |
|
|| |||||||||||||| ||||||||||| || |||| ||| |||||||| |||| |||||||| || | ||||||| ||| | |||||||| |
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| T |
8945540 |
agctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgtttttttgtgtgaagttaagt |
8945639 |
T |
|
| Q |
228 |
gcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaag |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||| || |
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|
| T |
8945640 |
gcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagag |
8945739 |
T |
|
| Q |
328 |
gagttgctgctttattatcatttccaatgtctttaatatgttccttagtat |
378 |
Q |
| |
|
||||||| ||| |||| | ||| |||||||||| |||||||||||||||| |
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|
| T |
8945740 |
gagttgcaacttcattacctttttcaatgtctttgatatgttccttagtat |
8945790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 25 - 376
Target Start/End: Complemental strand, 8963647 - 8963296
Alignment:
| Q |
25 |
gagtaatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaa |
124 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| ||||||||||| |||||||| || |||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
8963647 |
gagtaatgctagcaacataaaccgtttgtccttcaccaacattggtaactgtcctgtgaaattcttgggctgtccttggagaagaatttccagcgttgaa |
8963548 |
T |
|
| Q |
125 |
gaatgcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagtta |
224 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||| || || | ||| |||||||| || || |||||||| |||||||| ||| ||| | ||||| |
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| T |
8963547 |
aaaagcaataaaagaagggtagttgagatgcaaggaaggattagaacaatcattggatgatgatcttgttatggcagtaatgtgtttttgtgtgaagtta |
8963448 |
T |
|
| Q |
225 |
agtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaa |
324 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||| || || | |||||||||||||||||||| |
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|
| T |
8963447 |
agtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaatgcaa |
8963348 |
T |
|
| Q |
325 |
aaggagttgctgctttattatcatttccaatgtctttaatatgttccttagt |
376 |
Q |
| |
|
|||| ||||||||| | ||||| |||||||||||||| ||| |||||||||| |
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|
| T |
8963347 |
aaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagt |
8963296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 25 - 378
Target Start/End: Complemental strand, 8975043 - 8974690
Alignment:
| Q |
25 |
gagtaatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaa |
124 |
Q |
| |
|
|||||||| || ||||||||| | || ||| | ||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||| || |||||| |
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|
| T |
8975043 |
gagtaatgtgagcaacataaatcgattttccttgaccaacattggtaattgttctatgaaattcttgggtggtccttgaagaagaatttgcagcattgaa |
8974944 |
T |
|
| Q |
125 |
gaatgcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagtta |
224 |
Q |
| |
|
||| ||||||||||||||||| || |||||||| || |||| ||| |||||||| | |||||||||||| ||| ||||||| ||| | |||| |
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| T |
8974943 |
gaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgtttttttgtgtgaagttg |
8974844 |
T |
|
| Q |
225 |
agtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaa |
324 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | || || || | |||||||||||| ||||| |
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|
| T |
8974843 |
agtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttgtgcaa |
8974744 |
T |
|
| Q |
325 |
aaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtat |
378 |
Q |
| |
|
|||| |||||| | || ||| | |||||||||||||| || |||||||||||| |
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|
| T |
8974743 |
aaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtat |
8974690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 375
Target Start/End: Original strand, 9947908 - 9948258
Alignment:
| Q |
25 |
gagtaatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaa |
124 |
Q |
| |
|
|||||||| | | |||||||| ||||| | ||||||||||||| || |||||| | || || |||| || |||| |||||||||||||| |||||| |
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|
| T |
9947908 |
gagtaatgttggcaacataaactgtttatgcctcaccaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaa |
9948007 |
T |
|
| Q |
125 |
gaatgcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagtta |
224 |
Q |
| |
|
||| ||||||||| |||||| ||||| |||||| || |||| |||||||||||| | | |||||||| |||| |||||| ||| | ||||| |
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|
| T |
9948008 |
gaaagcaataaaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtgatatgtttctgtgtgaagtta |
9948107 |
T |
|
| Q |
225 |
agtgcacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaa |
324 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||| ||||||| |||||| |||||||| |||||| | | || ||||| || |||||| ||||||| |
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|
| T |
9948108 |
agtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataactagctcctaatgcaa |
9948207 |
T |
|
| Q |
325 |
aaggagttgctgctttattatcatttccaatgtctttaatatgttccttag |
375 |
Q |
| |
|
||||||||| |||| ||| | | ||| |||||||| ||||||||||||| |
|
|
| T |
9948208 |
gaggagttgcaactttgttaccttctccgatgtctttgatatgttccttag |
9948258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 9949368 - 9949424
Alignment:
| Q |
220 |
agttaagtgcacaaagaagattaacataatcttgaacaccaacatcataaataagac |
276 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||||||| ||||| |
|
|
| T |
9949368 |
agttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaagac |
9949424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 34962224 - 34962567
Alignment:
| Q |
29 |
aatgctagaaacataaattgtttctccctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaagaat |
128 |
Q |
| |
|
|||||||| ||||||||||| || ||| ||||||||||| |||||||||||| ||||||||| | | |||||||||||||||||||| |||||| || |
|
|
| T |
34962224 |
aatgctagcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttgtatcggccttgaagaagaatttccatcattgaaaaaa |
34962323 |
T |
|
| Q |
129 |
gcaataaaagaagggtagttaagatccaaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagttaagtg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||| |||||||| ||||| ||||||||||||| ||||||| ||||||| ||||||| |
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|
| T |
34962324 |
gcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgtttttttgtgagtatttaagtg |
34962423 |
T |
|
| Q |
229 |
cacaaagaagattaacataatcttgaacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaagg |
328 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34962424 |
cacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaagg |
34962523 |
T |
|
| Q |
329 |
agttgctgctttattatcatttccaatgtctttaatatgttccttag |
375 |
Q |
| |
|
||||||||| || || ||||||||||||| || |||||||||| |
|
|
| T |
34962524 |
tgttgctgct---ttgtctgttccaatgtctttgatttgttccttag |
34962567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 56 - 378
Target Start/End: Original strand, 21686634 - 21686953
Alignment:
| Q |
56 |
ctcaccaacatttgtaactgttctatgaaattctttggttgtccttgaagaagaatttccattattgaagaatgcaataaaagaagggtagttaagatcc |
155 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||||||||||||| || | | |||| |||| |||||||||||||||||||||||||| |
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|
| T |
21686634 |
ctcaccaacatttgtaactgttctgtgaaattcatttgttgtccttgaagaa---ttacgagcattggagaaagcaataaaagaagggtagttaagatct |
21686730 |
T |
|
| Q |
156 |
aaagacggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgnnnnnnngtgagtagttaagtgcacaaagaagattaacataatcttgaa |
255 |
Q |
| |
|
|| || |||| |||||||||||| ||||||||||||| |||||| ||||| ||| | |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
21686731 |
aaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactgatgtttttttgtgtgaagttaagtgcacaaagaagattaatataatcttgta |
21686830 |
T |
|
| Q |
256 |
caccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctgctttattatcatttccaat |
355 |
Q |
| |
|
|||| | |||||||| ||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
21686831 |
caccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggagttgctgctctgttaccatttccaat |
21686930 |
T |
|
| Q |
356 |
gtctttaatatgttccttagtat |
378 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
21686931 |
gtctttgatatgttccttagtat |
21686953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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