View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_24 (Length: 347)
Name: NF9532_low_24
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_24 |
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| [»] scaffold0176 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 139 - 331
Target Start/End: Complemental strand, 33831929 - 33831738
Alignment:
| Q |
139 |
gctcgtttattttgagtttttctataagcaatatgcattatgcaagtataataaaatctatttacagagtgctaaatagtacacattgaaggcacgtgca |
238 |
Q |
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| T |
33831929 |
gctcgtttattttgagtttttctataagcaatatgcattatgcaagtataataaaatctatttacagagtgctaaatagtacacattgaaggcacgtgca |
33831830 |
T |
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| Q |
239 |
ttagaccactaaagaaaagaaagatttcatttcatgtatgcaagcaagagatnnnnnnnntaaatacattgatgagatccattattttaaaat |
331 |
Q |
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| T |
33831829 |
ttagaccactaaagaaaagaaagatttcatttcatgtatgcaagcaagagataaaaaaaa-aaatacattgatgagatccattattttaaaat |
33831738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 33832047 - 33831956
Alignment:
| Q |
50 |
aagccgacaactctggttgatatggatgcaagttgcaagaaaggttcttaatctcgatttcaaaattgtt-ttttgttgtagaaccagaggc |
140 |
Q |
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| T |
33832047 |
aagctgacaactctggttgatatggatgcaagttgcaagaaaggttcttaatctcgatttcaaaattgtttttttgttgtagaaccagaggc |
33831956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 14500 - 14392
Alignment:
| Q |
214 |
atagtacacattgaaggcacgtgcattagaccactaaagaaaagaaagatttcatttcatgtatgcaagcaagagatnnnnnnnntaaatacattgatga |
313 |
Q |
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| T |
14500 |
atagtacatattgaaggcacgtgaattagaccactaaagaaaagaaagatt-----tcatgtatgcaagcaagagataaaaa----aaatacattgatga |
14410 |
T |
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| Q |
314 |
gatccattattttaaaat |
331 |
Q |
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| T |
14409 |
gatccattattttaaaat |
14392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 14614 - 14517
Alignment:
| Q |
139 |
gctcgtttattttgagtttttctataagcaatatgcattatg-caagtataa--------taaaatctatttacagagtgctaaatagtacacattga |
227 |
Q |
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| T |
14614 |
gctcgtttattttgagtttttctataagcaaaatgcattatgccaagtataagggatattcaaaatctatttacagagtgctaaacagtacacattga |
14517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 14709 - 14643
Alignment:
| Q |
72 |
tggatgcaagttgcaagaaaggttcttaatctcgatttcaaaattgttttttgttgtagaaccagag |
138 |
Q |
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| T |
14709 |
tggatgcaagttgcaaagaaggttcttgatctgaatttcaaaattgttttttgctgtagaaccagag |
14643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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