View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_26 (Length: 335)
Name: NF9532_low_26
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 6514122 - 6513831
Alignment:
| Q |
30 |
tacttttttaatgtatatttctgacaattttgttataaaaaactatgttcttgttatttnnnnnnnnntggtaacaaataaatatgtggtcaaaacaagc |
129 |
Q |
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| T |
6514122 |
tacttttttaatgtatatttttgacaattttgttataaaaaactatgttcttgttatttaaaaaaaa-tggtaacaaataaatatgtggtcaaaacaagc |
6514024 |
T |
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| Q |
130 |
ttat----gagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaac |
225 |
Q |
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| T |
6514023 |
ttatatatgagacaaatccaacactatcaacataattaaaaaataaaacattgtaattaatagtagcaatgccaccattataaatccaacaacatttaac |
6513924 |
T |
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| Q |
226 |
aagtctcaaactaaaactcaccgacataaaacaaatctcaatgaatctaacaaccaaggagttggagcggaggcaatgacgatccctagtaag |
318 |
Q |
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| T |
6513923 |
aagtctcaaactaaaactcaccgacctaaaacaaatctcaatgaatctaacaaccaaggagttggagcggaggcaatgacgatccctagtaag |
6513831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 39854098 - 39854026
Alignment:
| Q |
121 |
aaaacaagcttatgagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagca |
193 |
Q |
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| T |
39854098 |
aaaacaagcttatgagacaaatccaacatcatcaacatagttaagaaatacaacatcacaattaatagcagca |
39854026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 13055950 - 13056058
Alignment:
| Q |
98 |
tggtaacaaataaatatgtggtcaaaacaagcttatgagacaaatccaacactatcaacataattaa-aaaataaaacatcgtaattaatagtagcaatg |
196 |
Q |
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| T |
13055950 |
tggtatcaaataaatttgtggtagatacaagcttaggagacaaatccaacaccatcaacataattaacaaaatcaaa-atcataatcaatagcaacaatg |
13056048 |
T |
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| Q |
197 |
ccaccattat |
206 |
Q |
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|||| ||||| |
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| T |
13056049 |
ccacaattat |
13056058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 32918369 - 32918287
Alignment:
| Q |
153 |
caacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaa |
235 |
Q |
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|||||||||||| |||| | |||| |||||||||| | |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
32918369 |
caacataattaacaaatgtagcatcataattaatagcaataatgtgaccattataaatccaacaacattaaacaagtctcaaa |
32918287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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