View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_27 (Length: 334)
Name: NF9532_low_27
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 55674442 - 55674728
Alignment:
| Q |
22 |
agactatacatgcggcccatcatcacaagatatgaaatatatttcagtgataaattaattatcatgaccccaaaattagatcagtataaactgatagtga |
121 |
Q |
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| T |
55674442 |
agactatacatgcggcccatcatcacaagatatgaaatatatttcagtgataaattaattatcatgaccccaaaattagatcagtataaactgatagtga |
55674541 |
T |
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| Q |
122 |
gaattatttttgtctttcgcaaactaaagtgcatgatacaattttggtactatcatgaaaatcaattatgttctacattaagaggccaacaaaataaatt |
221 |
Q |
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| T |
55674542 |
gaattatttttgtctttcgcaaactaaagtgcatgatacaattttgctactatcatgaaaattaattatgttctacattaagaggccaacaaaataaatt |
55674641 |
T |
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| Q |
222 |
aagataaataacaaaccaaacaagttcagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgtta |
308 |
Q |
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| T |
55674642 |
aagataaataacaaaccaaacaagttcagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgtta |
55674728 |
T |
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