View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_28 (Length: 318)
Name: NF9532_low_28
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 50472668 - 50472516
Alignment:
| Q |
8 |
tggggcatttcgaatttcaaatttggggatatttaatttttggaacgttggtaattgattagacgatgaaatgttttcgttatttttgaaatttgtagta |
107 |
Q |
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| T |
50472668 |
tggggcatttcgaatttcaaatttggggatatttaatttttggaacgttggtaattgattagacgatgaaatgttttcgttattttttaaatttgtagta |
50472569 |
T |
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| Q |
108 |
gtcaaattatttcggataagatttgttatagtatgtaccaaaaagaaaattga |
160 |
Q |
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| T |
50472568 |
gtcaaattatttcggataagatttgttatagtatgtaccaaaaagaaaattga |
50472516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 50472491 - 50472360
Alignment:
| Q |
169 |
aaggggattatataaattgtcataaccttaatcaaaacaatgtcgataatccttaaaaaga-tgtcgatattgttaaattatacatcatctcttgggttt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
50472491 |
aaggggattatataaattgtcataaccttaatcaaaacaatgtcgataatccttaaaaaaaatgtcgatattgttaaattatacatcatctcttgggttt |
50472392 |
T |
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| Q |
268 |
aaaaatgtgtcattataaacgcgagtttcaac |
299 |
Q |
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| T |
50472391 |
aaaaatgtgtcataatagacgtgagtttcaac |
50472360 |
T |
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