View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_29 (Length: 310)

Name: NF9532_low_29
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_29
NF9532_low_29
[»] chr5 (16 HSPs)
chr5 (128-290)||(20371705-20371867)
chr5 (128-290)||(20397429-20397591)
chr5 (58-133)||(7254187-7254262)
chr5 (58-133)||(7261629-7261704)
chr5 (58-113)||(26552351-26552406)
chr5 (58-114)||(36370318-36370374)
chr5 (58-114)||(25449672-25449728)
chr5 (58-114)||(36994981-36995037)
chr5 (58-114)||(37008919-37008975)
chr5 (50-113)||(29885514-29885577)
chr5 (58-113)||(23576589-23576644)
chr5 (58-133)||(36384226-36384302)
chr5 (50-113)||(29902090-29902153)
chr5 (103-133)||(20371885-20371915)
chr5 (103-133)||(20397609-20397639)
chr5 (58-114)||(25676874-25676930)
[»] chr1 (2 HSPs)
chr1 (128-302)||(2334929-2335103)
chr1 (50-133)||(2335121-2335204)
[»] scaffold0484 (2 HSPs)
scaffold0484 (138-290)||(10495-10647)
scaffold0484 (50-133)||(10678-10761)
[»] chr2 (7 HSPs)
chr2 (59-271)||(21069126-21069331)
chr2 (147-290)||(35038973-35039117)
chr2 (58-133)||(22935161-22935236)
chr2 (58-133)||(22941125-22941200)
chr2 (58-133)||(22955020-22955095)
chr2 (58-114)||(39650515-39650571)
chr2 (103-132)||(35038903-35038932)
[»] chr3 (15 HSPs)
chr3 (128-290)||(15910106-15910268)
chr3 (128-290)||(15924349-15924511)
chr3 (50-131)||(21608293-21608375)
chr3 (50-131)||(21616921-21617003)
chr3 (58-114)||(46372131-46372187)
chr3 (58-114)||(46386258-46386314)
chr3 (50-133)||(19834271-19834356)
chr3 (58-133)||(15536744-15536820)
chr3 (58-113)||(46392468-46392523)
chr3 (58-113)||(46400216-46400271)
chr3 (58-133)||(5650827-5650904)
chr3 (58-133)||(15528055-15528131)
chr3 (59-114)||(15924257-15924312)
chr3 (58-114)||(15609565-15609621)
chr3 (103-133)||(18954601-18954631)
[»] chr6 (5 HSPs)
chr6 (147-286)||(15390412-15390551)
chr6 (50-133)||(15665406-15665489)
chr6 (58-114)||(16324643-16324699)
chr6 (58-114)||(18964629-18964685)
chr6 (58-114)||(20531761-20531818)
[»] scaffold0094 (2 HSPs)
scaffold0094 (128-290)||(29596-29758)
scaffold0094 (59-114)||(29795-29850)
[»] chr4 (3 HSPs)
chr4 (50-133)||(15566990-15567073)
chr4 (50-133)||(15579635-15579718)
chr4 (58-113)||(18216542-18216597)
[»] scaffold0014 (1 HSPs)
scaffold0014 (50-133)||(4613-4696)
[»] scaffold0755 (1 HSPs)
scaffold0755 (50-133)||(1795-1879)
[»] chr7 (10 HSPs)
chr7 (58-114)||(15684595-15684651)
chr7 (50-133)||(42630325-42630409)
chr7 (58-133)||(8810922-8810998)
chr7 (58-133)||(8818736-8818812)
chr7 (58-114)||(9461445-9461501)
chr7 (58-114)||(9475203-9475259)
chr7 (58-114)||(16387566-16387622)
chr7 (58-114)||(16401693-16401749)
chr7 (58-114)||(30364113-30364169)
chr7 (58-114)||(30378178-30378234)
[»] chr8 (1 HSPs)
chr8 (58-133)||(15708063-15708138)
[»] scaffold1575 (1 HSPs)
scaffold1575 (58-133)||(918-994)
[»] scaffold0029 (2 HSPs)
scaffold0029 (58-133)||(21060-21136)
scaffold0029 (58-133)||(34801-34877)
[»] scaffold0067 (1 HSPs)
scaffold0067 (58-114)||(43672-43728)
[»] scaffold0815 (1 HSPs)
scaffold0815 (59-113)||(4215-4269)
[»] scaffold1271 (1 HSPs)
scaffold1271 (58-133)||(998-1074)
[»] scaffold0269 (1 HSPs)
scaffold0269 (58-110)||(13731-13783)
[»] scaffold0435 (1 HSPs)
scaffold0435 (58-113)||(7563-7618)
[»] scaffold0182 (1 HSPs)
scaffold0182 (58-113)||(6167-6222)
[»] scaffold0034 (1 HSPs)
scaffold0034 (58-113)||(118645-118700)
[»] scaffold1855 (1 HSPs)
scaffold1855 (61-113)||(275-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (58-114)||(3809-3865)
[»] scaffold1761 (1 HSPs)
scaffold1761 (58-113)||(574-629)
[»] scaffold0422 (1 HSPs)
scaffold0422 (61-113)||(5671-5723)
[»] scaffold0101 (1 HSPs)
scaffold0101 (78-114)||(15735-15771)
[»] scaffold0066 (1 HSPs)
scaffold0066 (218-262)||(43751-43795)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 20371867 - 20371705
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  20371867 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaattttgtgaactacagcctatatatagccctctttgatcccatacgcgt 20371768  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  20371767 gggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcctgtggtct 20371705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 20397591 - 20397429
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  20397591 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaattttgtgaactacagcctatatatagccctctttgatcccatacgcgt 20397492  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  20397491 gggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcctgtggtct 20397429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 7254262 - 7254187
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7254262 tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttccgtcggagaag 7254187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 7261704 - 7261629
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7261704 tagggttccggcacggtggcgccgccgcactggccggccaaccaccgccggaaccccatcctttccgtcggagaag 7261629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 26552406 - 26552351
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  26552406 tagggttccggcgcggtggtgccgccgcaccggccggccaaccgccgccggaaccc 26552351  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 36370374 - 36370318
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  36370374 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 36370318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 25449728 - 25449672
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||    
T  25449728 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 25449672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 36995037 - 36994981
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  36995037 tagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 36994981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 37008975 - 37008919
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  37008975 tagggttccggcgcggtggcgccgccgcactagccggccaaccaccgccggaacccc 37008919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 29885514 - 29885577
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||| ||||||||||||||||||| |||||| ||| ||| ||||||||||| |||||||||    
T  29885514 taagttgttagggttccggcgcggtggcgccgccccacaggctggccaaccgccaccggaaccc 29885577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 23576644 - 23576589
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||||||||||||||||||||  || || ||||||||||| ||||||||||    
T  23576644 tagggttccggcgcggtggtgccgccgtaccggtcggccaaccgctgccggaaccc 23576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 36384302 - 36384226
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| ||||||  |||||||| |||||| ||| ||||| ||||||||| | || ||||||||    
T  36384302 tagggttccggcgcggtggcgccgccgaactggccgtccaaccaccgtcggaagccccatccccttcgccggagaag 36384226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 29902090 - 29902153
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||| ||||||||||||||||||| |||||| |||  ||  |||||||||| |||||||||    
T  29902090 taagttgttagggttccggcgcggtggcgccgccccacaagctagccaaccgccaccggaaccc 29902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 133
Target Start/End: Complemental strand, 20371915 - 20371885
Alignment:
Q  103 cgccggaaccccatcccttccgtcggagaag 133  Q
    |||||||||||||||||||||||||||||||    
T  20371915 cgccggaaccccatcccttccgtcggagaag 20371885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 133
Target Start/End: Complemental strand, 20397639 - 20397609
Alignment:
Q  103 cgccggaaccccatcccttccgtcggagaag 133  Q
    |||||||||||||||||||||||||||||||    
T  20397639 cgccggaaccccatcccttccgtcggagaag 20397609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 25676930 - 25676874
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||||||||||||| |||||||||  || ||||||||| ||| | ||||||||||    
T  25676930 tagggttccggcgcggaggtgccgccgtaccggccggccagccgtcaccggaacccc 25676874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 128 - 302
Target Start/End: Complemental strand, 2335103 - 2334929
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  2335103 gagaagagagaaaacgtgtgaggagagagaaggaaatctggagatgaatgatttttgtgaactacagcctatatataggcctctttgatcccatacgcgt 2335004  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtctctgctcctcctc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  2335003 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcctgtggtctatgctgctcctc 2334929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 2335204 - 2335121
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335204 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 2335121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 138 - 290
Target Start/End: Complemental strand, 10647 - 10495
Alignment:
Q  138 aaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgtgggtgtacgg 237  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  10647 aaaacgtgtgaggagagagaaggaaaattggaaatgaatgaattttgtgaactacaacctatatataggcctctttgatcccatacgcgtgggtgtacgg 10548  T
Q  238 ccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10547 ccttaccatgcacccatgcacccttgtcctttgaatctttgatcttgtggtct 10495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 10761 - 10678
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  10761 taagttgttagggttccggcgcggtggtgccgccgcactggcaggccaaccgccgccggaaccccatcctttccatcggagaag 10678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 21069126 - 21069331
Alignment:
Q  59 agggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaagggagaaaacgtgtgaggagagagaa 158  Q
    |||||||||||||||||| ||||||  || |  |||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||| |    
T  21069126 agggttccggcgcggtggcgccgccgtaccgatcggccaaccgccgccggaaccccatcccttccatcggag-------aaaacgtgtgaggagagagga 21069218  T
Q  159 ggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgtgggtgtacggccttaccatgcacccacgcac 258  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  21069219 ggaaaattggaaatgaatgaattctgtgaactacagcctatatataggcctctttgatcccatgcgtgtaggtgtacgaccttaccatgcacccacgcac 21069318  T
Q  259 ccttgtcctttga 271  Q
    |||||||||||||    
T  21069319 ccttgtcctttga 21069331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 35038973 - 35039117
Alignment:
Q  147 gaggagagagaa-ggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgtgggtgtacggccttacca 245  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  35038973 gaggagagagaaaggaaatttggaaatgaatgaattttgtgaactacagcctatatataggcctctttgatctcatacgcgtgggtgtacggccttacca 35039072  T
Q  246 tgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  35039073 tgcacccacgcacccttgttctttgaatctttgatcctgtggtct 35039117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22935161 - 22935236
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacc-ccatcccttccgtcggagaag 133  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||  ||||||||||||    
T  22935161 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaaccaccatccc-accgtcggagaag 22935236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22941125 - 22941200
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacc-ccatcccttccgtcggagaag 133  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||  ||||||||||||    
T  22941125 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaaccaccatccc-accgtcggagaag 22941200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22955020 - 22955095
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacc-ccatcccttccgtcggagaag 133  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||  ||||||||||||    
T  22955020 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaaccaccatccc-accgtcggagaag 22955095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 39650515 - 39650571
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||    
T  39650515 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 39650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 35038903 - 35038932
Alignment:
Q  103 cgccggaaccccatcccttccgtcggagaa 132  Q
    ||||||||||||||||||||||||||||||    
T  35038903 cgccggaaccccatcccttccgtcggagaa 35038932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 128 - 290
Target Start/End: Original strand, 15910106 - 15910268
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||    
T  15910106 gagaagagagaaaacgtgtgaggagagagaaggaaagctggaaatgaatgaattctgtgaactacagcctatatataggcctctttgatcccatacgcgt 15910205  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||  |||||||| ||||||||    
T  15910206 gggtgtacggccttgccatgcatccacgcaccctggtcctttgatcctttgatcctgtggtct 15910268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 128 - 290
Target Start/End: Original strand, 15924349 - 15924511
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||    
T  15924349 gagaagagagaaaacgtgtgaggagagagaaggaaagctggaaatgaatgaattctgtgaactacagcctatatataggcctctttgatcccatacgcgt 15924448  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||  |||||||| ||||||||    
T  15924449 gggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgatcctgtggtct 15924511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 21608293 - 21608375
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggaga 131  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||    
T  21608293 taagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatccttcccgtcggaga 21608375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 21616921 - 21617003
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggaga 131  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||    
T  21616921 taagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatccttcccgtcggaga 21617003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 46372131 - 46372187
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  46372131 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46372187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 46386258 - 46386314
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  46386258 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 46386314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 19834271 - 19834356
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatc-cctt-ccgtcggagaag 133  Q
    ||||||| |||||||||||| |||||| |||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||||||    
T  19834271 taagttgttagggttccggcacggtggcgccgcctcaccggccggccagccgccgccggaaccccctcaccttgccgtcggagaag 19834356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 15536820 - 15536744
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatccctt-ccgtcggagaag 133  Q
    |||||||||||| |||||| |||||| ||| ||| |||||||||||||||||||||| | |||| ||||||||||||    
T  15536820 tagggttccggcacggtggcgccgccgcaccggctggccaaccgccgccggaaccccttaccttgccgtcggagaag 15536744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 46392523 - 46392468
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||    
T  46392523 tagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46392468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 46400271 - 46400216
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||    
T  46400271 tagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaaccc 46400216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 5650904 - 5650827
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatc-cctt-ccgtcggagaag 133  Q
    ||||||||||||||||| | |||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||||||    
T  5650904 tagggttccggcgcggtagcgccgccgcaccggccggccagccgccgccggaaccccctcaccttgccgtcggagaag 5650827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 15528131 - 15528055
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatccctt-ccgtcggagaag 133  Q
    |||||||||||| |||||| |||||| ||| ||| ||||||| |||||||||||||| | |||| ||||||||||||    
T  15528131 tagggttccggcacggtggcgccgccgcaccggctggccaactgccgccggaaccccttaccttgccgtcggagaag 15528055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 15924257 - 15924312
Alignment:
Q  59 agggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||| |||||| |||||| ||| ||||||||| ||||||||||||||||    
T  15924257 agggttccggcacggtggcgccgccgcaccggccggccagccgccgccggaacccc 15924312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 15609621 - 15609565
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||||||||| |||||| |||||| ||| ||||||||| ||||| ||||||||||    
T  15609621 tagggttccggcacggtggcgccgccgcaccggccggccagccgccaccggaacccc 15609565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 133
Target Start/End: Complemental strand, 18954631 - 18954601
Alignment:
Q  103 cgccggaaccccatcccttccgtcggagaag 133  Q
    |||||||||||||||||||||||||||||||    
T  18954631 cgccggaaccccatcccttccgtcggagaag 18954601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 15390551 - 15390412
Alignment:
Q  147 gaggagagagaa-ggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgtgggtgtacggccttacca 245  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15390551 gaggagagagaaaggaaatttggaaatgaatgaattttgtga-ctacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttacca 15390453  T
Q  246 tgcacccacgcacccttgtcctttgaatctttgatcttgtg 286  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  15390452 tgcacccacgcacccttgtcctttgaatctttgatcctgtg 15390412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 15665489 - 15665406
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  15665489 taagttgttagggctccggcgcggtggtgccgccgcgctggccggccaactgccgccggaaccccatcctttccgtcggagaag 15665406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 16324699 - 16324643
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  16324699 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16324643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 18964685 - 18964629
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||    
T  18964685 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccc 18964629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 20531818 - 20531761
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggcc-ggccaaccgccgccggaacccc 114  Q
    |||||||||||||||| ||||||| | ||| |||| |||||||| |||||||||||||    
T  20531818 tagggttccggcgcggaggtgccgtcgcaccggcccggccaaccaccgccggaacccc 20531761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 29758 - 29596
Alignment:
Q  128 gagaagggagaaaacgtgtgaggagagagaaggaaatttggaaatgaatgaagtttgtgaactacagcctatatataggcctctttgatcccatgcgcgt 227  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||    
T  29758 gagaagagagaaaacgtgtgaggagagagaaggaaagctggaaatgaatgaattctgtgaactacagcctatatataggcctctttgatcccatacgcgt 29659  T
Q  228 gggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcttgtggtct 290  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||  |||||||| ||||||||    
T  29658 gggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgatcctgtggtct 29596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 29850 - 29795
Alignment:
Q  59 agggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||| ||| || |||||| ||| ||||||||| ||||||||||||||||    
T  29850 agggttccggcacggcggcgccgccgcaccggccggccagccgccgccggaacccc 29795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 15567073 - 15566990
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  15567073 taagttgttagggttccggcgcggtggtgccgccacactggccggccaactgccgccgaaaccccatcctttccgtcggagaag 15566990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 15579718 - 15579635
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  15579718 taagttgttagggttccggcgcgatggtgccgccgcactggccgaccaactgccgccggaaccccatcctttccgtcggagaag 15579635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 18216542 - 18216597
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    |||||||||||| |||||||| |||| ||| ||||| |||||||||||||||||||    
T  18216542 tagggttccggcacggtggtgtcgccgcaccggccgaccaaccgccgccggaaccc 18216597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 4613 - 4696
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  4613 taagttgttagggctccggcgcggtggtgccgccgcgctggccggccaactgccgccggaaccccatcctttcagtcggagaag 4696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 1795 - 1879
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  1795 taagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 1879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15684595 - 15684651
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15684595 tagggttccggcgcggtggtgccgccgcactggccggccaaccgccgccggaacccc 15684651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 42630409 - 42630325
Alignment:
Q  50 taagttggtagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  42630409 taagttgttagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 42630325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 8810922 - 8810998
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  8810922 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 8810998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 8818736 - 8818812
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  8818736 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 8818812  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 9461445 - 9461501
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  9461445 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9461501  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 9475203 - 9475259
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  9475203 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 9475259  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 16387622 - 16387566
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  16387622 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16387566  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 16401749 - 16401693
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  16401749 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccc 16401693  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 30364169 - 30364113
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||    
T  30364169 tagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30364113  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 30378234 - 30378178
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    ||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||    
T  30378234 tagggttccggcgcggtggcgccgccgcgctggccggccaaccaccgccggaacccc 30378178  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 15708063 - 15708138
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| | || ||||||||    
T  15708063 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaaccccatccccttcgccggagaag 15708138  T

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Target: scaffold1575 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 918 - 994
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  918 tagggttccggcgtggtggcgccgccgcactggccggccaaccaccgccggaacccccatcctttccgtcggagaag 994  T

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Target: scaffold0029 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 21060 - 21136
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  21060 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 21136  T

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Target: scaffold0029; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 34801 - 34877
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa-ccccatcccttccgtcggagaag 133  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  34801 tagggttccggcgcggtggcgccgccgcactggccggccaaccaccgccggaacccccatcccctccgccggagaag 34877  T

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Target: scaffold0067 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 43728 - 43672
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43728 tagggttccgacgcggtggtgccgccgcaccggccggccaaccgccgccggaacccc 43672  T

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Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 4269 - 4215
Alignment:
Q  59 agggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  4269 agggttccggcgcggtggcgccgccgcaccggccggccaaccgccgccggaaccc 4215  T

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Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 1074 - 998
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc-catcccttccgtcggagaag 133  Q
    |||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||| | || | |||||||||||||    
T  1074 tagggttccggcacggtggtgccgccgcaccggccggccaacctccgccggaacccacctcacctccgtcggagaag 998  T

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Target: scaffold0269 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 13783 - 13731
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaa 110  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||    
T  13783 tagggttccggcgtggtggcgccgccgcaccggccggccaaccgccgccggaa 13731  T

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Target: scaffold0435 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 7618 - 7563
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||||||| ||||||||||||  || || ||||||||||||||||||||||    
T  7618 tagggttccggcgtggtggtgccgccgtaccggtcggccaaccgccgccggaaccc 7563  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 6167 - 6222
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    |||||||| ||| |||||| |||||| ||| |||||||||||||||||||||||||    
T  6167 tagggttctggcacggtggcgccgccgcaccggccggccaaccgccgccggaaccc 6222  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 118700 - 118645
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||||||||||||||||||||  || |||||||||||||||| | ||||||    
T  118700 tagggttccggcgcggtggtgccgccgtaccggccggccaaccgccgtcagaaccc 118645  T

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Target: scaffold1855 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 275 - 327
Alignment:
Q  61 ggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||||| |||||| |||||| ||| ||||||||||||| |||||||||||    
T  275 ggttccggcacggtggcgccgccgcaccggccggccaaccgtcgccggaaccc 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 3865 - 3809
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||||||||||||| |||||||||  || ||||||||| ||||| ||||||||||    
T  3865 tagggttccggcgcggaggtgccgccgtaccggccggccagccgccaccggaacccc 3809  T

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Target: scaffold1761 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 629 - 574
Alignment:
Q  58 tagggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    |||||||||| |||||||| |||||| ||| || ||||||||| ||||||||||||    
T  629 tagggttccgacgcggtggcgccgccgcaccggtcggccaaccaccgccggaaccc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 5723 - 5671
Alignment:
Q  61 ggttccggcgcggtggtgccgccacactggccggccaaccgccgccggaaccc 113  Q
    ||||||| ||||| ||||||||  ||| |||||||||||||||||| ||||||    
T  5723 ggttccgacgcggcggtgccgctgcaccggccggccaaccgccgccagaaccc 5671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 15771 - 15735
Alignment:
Q  78 gccgccacactggccggccaaccgccgccggaacccc 114  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  15771 gccgccgcaccggccggccaaccgccgccggaacccc 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 43795 - 43751
Alignment:
Q  218 ccatgcgcgtgggtgtacggccttaccatgcacccacgcaccctt 262  Q
    |||| ||||||||||||||| |||||||||||||| ||| |||||    
T  43795 ccatacgcgtgggtgtacggtcttaccatgcaccctcgcgccctt 43751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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