View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_3 (Length: 608)

Name: NF9532_low_3
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_3
NF9532_low_3
[»] chr3 (6 HSPs)
chr3 (1-590)||(49206293-49206885)
chr3 (307-590)||(49201638-49201930)
chr3 (439-590)||(49211313-49211471)
chr3 (459-590)||(49186818-49186950)
chr3 (489-590)||(49190552-49190653)
chr3 (325-370)||(49190372-49190417)
[»] chr1 (6 HSPs)
chr1 (439-590)||(32593632-32593784)
chr1 (459-590)||(31526634-31526766)
chr1 (439-590)||(51823495-51823647)
chr1 (482-590)||(37030012-37030120)
chr1 (284-413)||(37029786-37029918)
chr1 (325-371)||(32594037-32594083)
[»] chr4 (1 HSPs)
chr4 (439-560)||(52267390-52267516)
[»] chr8 (2 HSPs)
chr8 (528-590)||(26755869-26755931)
chr8 (278-371)||(26755693-26755785)


Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 49206293 - 49206885
Alignment:
Q  1 tgagcagcggcacggcaatagcggtgagagggatgatgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49206293 tgagcagcggcacggcaatagcggtgagagggatggtgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaag 49206392  T
Q  101 catgatttgatttcaatttattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49206393 catgatttgatttcaatttattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccata 49206492  T
Q  201 taaccaaaattttgaggccctgtaaattggtaaagaactcgttatttcatgacttacgcataccgacaaaaagaataaccacgatgtgatgattgtcctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  49206493 taaccaaaattttgaggccctgtaaattggtaaagaactcgttatttcatgacttacgcataccgacaacaaaaataaccacgatgtgatgattgtccct 49206592  T
Q  301 gtcagaagttttgttttaaacgccaaaattccattcaaaaaataccaagcatgtaaaaatgtaaactaaatcatcatatgaca---tagtagtttgaacc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  49206593 gtcagaagttttgttttaaacgccaaaattccattcaaaaaataccaagcatgtaaaaatgtaaactaaatcatcatatgacatagtagtagtttgaacc 49206692  T
Q  398 taaaactaataaaagactggtgaataaaacacatatcacacaataaaaggtactgctattgtaaacctaatacttgcatctccaaattaagagtttttgt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49206693 taaaactaataaaagactggtgaataaaacacatatcacacaataaaaggtactgctattgtaaacctaatacttgcatctccaaattaagagtttttgt 49206792  T
Q  498 caggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49206793 caggtaaagatcccatccaagccggaggaaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 49206885  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 307 - 590
Target Start/End: Original strand, 49201638 - 49201930
Alignment:
Q  307 agttttgttttaaacgccaaaattccattcaaaaaa-taccaagcatgtaaaaatgtaaactaaatcatcatatgacatagtagtttgaacctaaaacta 405  Q
    ||||||||||||||| |||||| | ||||||||||| ||||| ||||||||||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  49201638 agttttgttttaaacaccaaaagtgcattcaaaaaaataccatgcatgtaaaaatgtaaattaaattgtcatataacataatagtttgaacctaaaacta 49201737  T
Q  406 ataaaagactggtgaataaaacacat--atcacacaataaaaggtactgctattgtaaacctaatacttgcatc------tccaaattaagagtttttgt 497  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||| ||  | ||||||||||||||||||       ||| ||||||| | |||| |    
T  49201738 ataaaagactggtgaatcaaacacatcaatcacacaataaaaggtactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttct 49201837  T
Q  498 caggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||| ||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49201838 cagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacagaggtggcaacatcttgtagacaccagcaa 49201930  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 439 - 590
Target Start/End: Original strand, 49211313 - 49211471
Alignment:
Q  439 aataaaaggtactgctattgtaaacctaatacttgcatctccaaattaagagtt-------tttgtcaggtaaagatcccatccaagccggaggcaacat 531  Q
    |||||||| |||| ||| |||||||||||||||||||||||| |||||||| ||       |||||||| ||| |||||||||||||| |||||||||||    
T  49211313 aataaaagatactactactgtaaacctaatacttgcatctcctaattaagacttaagagcttttgtcagataaggatcccatccaagcaggaggcaacat 49211412  T
Q  532 gcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  49211413 gcctgtttgctcatggacagtcttaaacagaggtggcaacatcttgtacacaccagcaa 49211471  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 459 - 590
Target Start/End: Original strand, 49186818 - 49186950
Alignment:
Q  459 taaacctaatacttgcatc-tccaaattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaa 557  Q
    |||||| |||||||||||| ||| ||| ||||| |||| |||| ||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49186818 taaaccaaatacttgcatcatcctaatcaagagcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaa 49186917  T
Q  558 acagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||||||| |||||||||||||||||||||||||    
T  49186918 acagaggtggcaacatcttgtagacaccagcaa 49186950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 590
Target Start/End: Original strand, 49190552 - 49190653
Alignment:
Q  489 agtttttgtcaggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagc 588  Q
    ||||||||||||| ||   |||||||||||| || || ||||| || ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  49190552 agtttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatgaacagtcttaaacaaaggtggcaacatcttgtagacaccagc 49190651  T
Q  589 aa 590  Q
    ||    
T  49190652 aa 49190653  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 49190372 - 49190417
Alignment:
Q  325 aaaattccattcaaaaaataccaagcatgtaaaaatgtaaactaaa 370  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||    
T  49190372 aaaattccattcataaaataccaagcatgtaaaagtgtaaattaaa 49190417  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 439 - 590
Target Start/End: Complemental strand, 32593784 - 32593632
Alignment:
Q  439 aataaaaggtactgctattgtaaacctaatacttgcatc-tccaaattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgcctgt 537  Q
    ||||||||||| | ||| | ||||||||||||||||||| ||| ||||||||| ||||||| | ||| | |||||||||||| |||||||||||||||||    
T  32593784 aataaaaggtattactactataaacctaatacttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatgcctgt 32593685  T
Q  538 ttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  32593684 ttgctcatggacagtcttaaacagaggtggcagcatcttgtaaacaccagcaa 32593632  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 459 - 590
Target Start/End: Original strand, 31526634 - 31526766
Alignment:
Q  459 taaacctaatacttgcatc-tccaaattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaa 557  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| | ||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  31526634 taaacctaatacttgcatcctcctaattaagagcttttgtctgataaggttcctatccaagcaggaggcaacatgcctgtttgctcatggacagtcttaa 31526733  T
Q  558 acagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||| ||| |||||||||||||| ||||||||||    
T  31526734 acaaaggtggcaacatcttgtaaacaccagcaa 31526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 439 - 590
Target Start/End: Original strand, 51823495 - 51823647
Alignment:
Q  439 aataaaaggtactgctattgtaaacctaatactt---gcatc-tccaaattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgcc 534  Q
    ||||||||||||| ||||   |||||||||||||   ||||| ||| ||||||||| ||||||| | ||| | |||||||||||| ||||||||||||||    
T  51823495 aataaaaggtactactat---aaacctaatacttcttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatgcc 51823591  T
Q  535 tgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  51823592 tgtttgctcatggacagtcttgaacagaggtggcagcatcttgtagacaccagcaa 51823647  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 590
Target Start/End: Original strand, 37030012 - 37030120
Alignment:
Q  482 aattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtaga 581  Q
    |||||||||||||||||||| ||   |||||||||||| || || ||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37030012 aattaagagtttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtaga 37030111  T
Q  582 caccagcaa 590  Q
    |||||||||    
T  37030112 caccagcaa 37030120  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 37029786 - 37029918
Alignment:
Q  284 atgtgatgattgtccttgtcagaagttttgttttaaacgccaaaattccattcaaaaaatac---caagcatgtaaaaatgtaaactaaatcatcatatg 380  Q
    |||||||| | ||| |||| || ||||||||||| ||||||||||||||||| |||||| |    ||||||  |||||||||||| ||||||||||||||    
T  37029786 atgtgatgttagtctttgttaggagttttgttttgaacgccaaaattccatttaaaaaaaaaaaacaagcaactaaaaatgtaaattaaatcatcatatg 37029885  T
Q  381 acatagtagtttgaacctaaaactaataaaaga 413  Q
    | |||  ||||| |||| |||||||||||||||    
T  37029886 atataagagtttaaacccaaaactaataaaaga 37029918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 32594083 - 32594037
Alignment:
Q  325 aaaattccattcaaaaaataccaagcatgtaaaaatgtaaactaaat 371  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||    
T  32594083 aaaattccattcataaaataccaagcatgtaaaattgtaaattaaat 32594037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 439 - 560
Target Start/End: Complemental strand, 52267516 - 52267390
Alignment:
Q  439 aataaaaggtactgctattgtaaacctaatacttgcat-----ctccaaattaagagtttttgtcaggtaaagatcccatccaagccggaggcaacatgc 533  Q
    ||||||||||||| ||| | |||||||||||||||| |     |||| ||||||||| ||||||| | ||| | |||||||||||| |||||||||||||    
T  52267516 aataaaaggtactactactataaacctaatacttgcttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatgc 52267417  T
Q  534 ctgtttgctcatggacagtcttaaaca 560  Q
    |||||||||||||||||||||||||||    
T  52267416 ctgtttgctcatggacagtcttaaaca 52267390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 528 - 590
Target Start/End: Original strand, 26755869 - 26755931
Alignment:
Q  528 acatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaa 590  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  26755869 acatgcctgtttgctcatggactgtcttaaacagaggtggcaacatcttgtacacaccagcaa 26755931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 26755693 - 26755785
Alignment:
Q  278 accacgatgtgatgattgtccttgtcagaagttttgttttaaacgccaaaattccattcaaaaaataccaagcatgtaaaaatgtaaactaaat 371  Q
    |||||||||||||| | |||||| | || ||||||||||| | ||| |||||||| |||| |||||||||||||| |||||||||||| |||||    
T  26755693 accacgatgtgatgttagtccttct-aggagttttgtttttatcgcaaaaattccgttcataaaataccaagcatataaaaatgtaaattaaat 26755785  T

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