View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_33 (Length: 306)
Name: NF9532_low_33
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 276
Target Start/End: Original strand, 35882302 - 35882459
Alignment:
| Q |
116 |
tgcaggttaagatagatgaattaatgagcgatatggggggagctctacacactaaaccgtgtcatcaaatttaaactctgtcattgtgaaaaatgttttg |
215 |
Q |
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| T |
35882302 |
tgcaggttaagatagatgaattaatgattgaaatggggggagctctacacactacaccgt--catcagatttaaactctgtcattgtgaaaaatgtttgg |
35882399 |
T |
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| Q |
216 |
gctccagagtacaaggtcgttggtacatga-atttttgttctctgtttttatattattctta |
276 |
Q |
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| T |
35882400 |
gctccagagtacaaggtc--tggtacatgatgtttttgttctatgtttttatattattctta |
35882459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 35900288 - 35900383
Alignment:
| Q |
194 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgt-tggtacatgaatttttgttctctgtttttatattattcttaattatgatatac |
288 |
Q |
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| T |
35900288 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgtctggtacatgaatttttgttctctgtttttatattattcttaactatgatatac |
35900383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 35900191 - 35900287
Alignment:
| Q |
53 |
cttttattgaaacgctcataagttttcagttatttctcttggtattttatccttcannnnnnntgcaggttaagatagatgaattaatgagcgatat |
149 |
Q |
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| T |
35900191 |
cttttattgaaacgctcataagttttcagttatttctcttggtattttatccttcactccccctgcaggttaagatagatgaattaatgagcgatat |
35900287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35900139 - 35900182
Alignment:
| Q |
17 |
ttctccatatggttgacaagtccaagactacttgggcttttatt |
60 |
Q |
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| T |
35900139 |
ttctccatatggttgacaagtccaagactacttgggcttttatt |
35900182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 288
Target Start/End: Complemental strand, 10212016 - 10211850
Alignment:
| Q |
116 |
tgcaggttaagatagatgaattaatgagcgatatggggggagctctacacactaaaccgtgtcatcaaatttaaactctgtcattgtgaaaaatgttttg |
215 |
Q |
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|||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||| | ||| |||| |||| |||||| ||||||||||||||| |
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| T |
10212016 |
tgcaggttaagatagaagaattagtgactgaaatggggggagctctaca---taaaccga--cgtcagatttgaactttgtcatcgtgaaaaatgttttg |
10211922 |
T |
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| Q |
216 |
gctccagagtacaaggtcgttggtacatgaa-tttttgttctctgtttttatattattcttaattatgatatac |
288 |
Q |
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| T |
10211921 |
gctcaaaagtacaaggtc--tggtacctgaagtttttgttctgtacttttatattattctcaactatgacatac |
10211850 |
T |
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