View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_34 (Length: 302)
Name: NF9532_low_34
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 39238090 - 39238372
Alignment:
| Q |
1 |
accaagcattagaacaaaagctcctacataagctttttcggtgttttttaacaaaaagacggaaaatagtgctcctgttccgaatggtaatatcatacca |
100 |
Q |
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| T |
39238090 |
accaagcattagaacaaaagctcctacataagctttttcggtgttttttaacaaaaagatggaaaatagtgctcctgttccgaatggtaatatcatacca |
39238189 |
T |
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| Q |
101 |
gctactgctatggtaattgattttctacctatgcgtcgtagtgcagatgcatccatgcctactccaaccaagaatagaaaatataaaagaccaacgtttg |
200 |
Q |
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| T |
39238190 |
gctactgctatggtaattgattttctacctatgcgtcgtagtgcagatgcatccatgcctactccaaccaagaatagaaaatataaaagaccaacgtttg |
39238289 |
T |
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| Q |
201 |
ccattgtttcaatcaccatcacacttcttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggaccc |
283 |
Q |
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| T |
39238290 |
ccattgtttcaatcaccatcacacttcttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggaccc |
39238372 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 44056384 - 44056482
Alignment:
| Q |
164 |
ccaaccaagaatagaaaatataaaagaccaacgtttgccattgtttcaatcaccatcacacttcttagaggaaaaacagcatctgcaaatgttttgttt |
262 |
Q |
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||||||||||| |||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||| |||| |
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| T |
44056384 |
ccaaccaagaaaagaaaataaagaagaccaacattcgccattgtttcaatcaccatcacacttcttagagggaaaactgcattggcaaatatttcgttt |
44056482 |
T |
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