View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_36 (Length: 301)
Name: NF9532_low_36
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 31389760 - 31389466
Alignment:
| Q |
1 |
aagattggcaactctcatttaatccatagggtgtaatgattagttgtttgtcgaggagcaataatggagtcatggacaattgcaagaattgttgaagaca |
100 |
Q |
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| T |
31389760 |
aagattggcaactctcatttaatccatagggtgtaataattagttgtttgtcggggagcaataatggagtcatggacaattgcaagaattgttgaagaca |
31389661 |
T |
|
| Q |
101 |
tggtaaagtcattagaagttaagagtctctaatttgtgtctgaaaaatatac-acacttgtccttaaaaaatgtatgatatttgtaattgatattgtatt |
199 |
Q |
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| T |
31389660 |
tggtaaagtcattagaagttaagagtctctaatttgtgtctgaaaaatatacaacacttgtccttaaaaaatgtatgatatttgtaattgatattgtatt |
31389561 |
T |
|
| Q |
200 |
tttaaattctcttttatgtaagttgctatccttcttgtaatccttttaagtatttttgaattcagcattctgttcgacctttctcttctctgctt |
294 |
Q |
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| T |
31389560 |
tttaaattctcttttatgtaagttgctatccttcttgtaatccttttaagtatttttgaattcagcattctgttcgacctttctcttctctgctt |
31389466 |
T |
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