View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_38 (Length: 286)
Name: NF9532_low_38
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3810999 - 3810732
Alignment:
| Q |
1 |
tagctcttactattccatcaggataccaaggaaatgccataaccattaggactccaagaatcccaagccaaggtaccaaaactggtaacattggtagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810999 |
tagctcttactattccatcaggataccaaggaaatgccataaccattaggactccaagaatcccaagccaaggtaccaaaactggtaacattggtagaag |
3810900 |
T |
|
| Q |
101 |
aaagatattaattgcaattgagcaaaatgcaaaagaaccaagaaaatacaggatccaaccaagtagagggtgaattgtgtgaggtatgataaagacaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3810899 |
aaagatattaattgcaattgagcaaaatgcaaaagaaccaagaaaatacaggatccaaccaagtagagggtgaattgtgtgaggtatgataaagactggt |
3810800 |
T |
|
| Q |
201 |
gttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgttgtgtgccagggtgatgct |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3810799 |
gttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgctgtgtgccagggtgatgct |
3810732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 41672554 - 41672655
Alignment:
| Q |
2 |
agctcttactattccatcaggataccaaggaaatgccataaccattaggactccaagaatcccaagccaaggtaccaaaactggtaacattggtagaaga |
101 |
Q |
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||||||||||| ||||| |||||||||||||| ||||| || |||| ||||||| ||| |||| ||| || | || ||| ||||||| ||| |||||| |
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| T |
41672554 |
agctcttactaccccatccggataccaaggaaacgccatgacaattaaaactccaataataccaaaccacggcatcagaaccggtaacactggaagaaga |
41672653 |
T |
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| Q |
102 |
aa |
103 |
Q |
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|| |
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| T |
41672654 |
aa |
41672655 |
T |
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