View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_42 (Length: 275)
Name: NF9532_low_42
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 48374799 - 48375054
Alignment:
| Q |
6 |
agcagcacagattaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374799 |
agcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
48374898 |
T |
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| Q |
106 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374899 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
48374998 |
T |
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| Q |
206 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcatatttcc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374999 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcatatttcc |
48375054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 26095394 - 26095149
Alignment:
| Q |
16 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
115 |
Q |
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||||| |||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||| || |||||| |
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| T |
26095394 |
attaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaacaactgaaccactccaac |
26095295 |
T |
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| Q |
116 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
215 |
Q |
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| T |
26095294 |
cagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccc |
26095195 |
T |
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| Q |
216 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttcc |
261 |
Q |
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| T |
26095194 |
tgatagtttcaactgccctaaggattcgacgcgtgatcatatttcc |
26095149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 53430997 - 53430762
Alignment:
| Q |
26 |
tgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaaccaggtctcgt |
125 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||||||| || ||||||||| || |
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| T |
53430997 |
tgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgt |
53430898 |
T |
|
| Q |
126 |
ttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttc |
225 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
53430897 |
ttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttc |
53430798 |
T |
|
| Q |
226 |
aactgccccaaggaatcaactcctgatcatatttcc |
261 |
Q |
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|||||||| ||||| || |||| ||||||||||||| |
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| T |
53430797 |
aactgccctaaggattcgactcgtgatcatatttcc |
53430762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 53423045 - 53422799
Alignment:
| Q |
16 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
115 |
Q |
| |
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||||| |||||||||| ||||||||| || |||||||||| | ||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |
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| T |
53423045 |
attaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaatatctgaatcattccaac |
53422946 |
T |
|
| Q |
116 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaa-ccactattaaggttatttcaaaaactgtcc |
214 |
Q |
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|||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||| ||| |||||||| |||| |
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| T |
53422945 |
cagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtcc |
53422846 |
T |
|
| Q |
215 |
ctgatactttcaactgccccaaggaatcaactcctgatcatatttcc |
261 |
Q |
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||| || ||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
53422845 |
ctggtagtttcagttgccctaaggattcaactcctgatcatatttcc |
53422799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 53307857 - 53307608
Alignment:
| Q |
6 |
agcagcacagattaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
105 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||| || |||| |||| | |||||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
53307857 |
agcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaacaactgaa |
53307758 |
T |
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| Q |
106 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
205 |
Q |
| |
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|||||||||| || || ||||||||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| | ||| |||| || | |
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| T |
53307757 |
ccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctcta |
53307658 |
T |
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| Q |
206 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcat |
255 |
Q |
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|||| | |||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
53307657 |
aaaccgcccctgatagtttcaactgccccaaggattcaactattgatcat |
53307608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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