View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_46 (Length: 269)
Name: NF9532_low_46
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 15765581 - 15765339
Alignment:
| Q |
10 |
ggtgttgctagcagtaaaatcacaccatattacaagtgatgagaaagtatgctagaatttatacctgaatgtttgagtgagatcaatcttgaatttccct |
109 |
Q |
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| T |
15765581 |
ggtgttgctagcagtaaaatcataccatattacaagtgatgagaaagtatgctagaatttatacctgaatgtttgagtgagatcaatcttgaatttgcct |
15765482 |
T |
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| Q |
110 |
ttctttgtatactctttcaaactaagctcatataattctttagggtcattaggaacaactatatcaaattttcttatagctgccacaaataccttagcca |
209 |
Q |
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| T |
15765481 |
ttctttgtatactctttcaaactaagctcatataattctttagggtcattaggaacaactatatcaaattttcttatagctgccacaaataccttagcca |
15765382 |
T |
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| Q |
210 |
tgctaatgaaaggactccctttaatcaatttgtgtctataaaa |
252 |
Q |
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| T |
15765381 |
tgctaatgaaaggactccctttaatcaatttgtgtctataaaa |
15765339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 15754852 - 15754654
Alignment:
| Q |
55 |
agtatgctagaatttatacctgaatgtttgagtgagatcaatcttgaatttccctttctttgtatactctttcaaactaagctcatataattctttaggg |
154 |
Q |
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| T |
15754852 |
agtatggtagaatttatacttgaatgtttgagtgagatcaatcctgaattttcctttctttgtatactcttccaaactaagctcatataattctttaggg |
15754753 |
T |
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| Q |
155 |
tcattaggaacaactatatcaaattttcttatagctgccacaaataccttagccatgctaatgaaaggactccctttaatcaatttgtgtctataaaaa |
253 |
Q |
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| T |
15754752 |
tcatcaggaacaactgcatcaaatttccttatagctgccacaatgaccttagccatgctaataaatggactccctttaatcaatttgtgtctataaaaa |
15754654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 15779208 - 15779007
Alignment:
| Q |
48 |
atgagaaagtatgctagaatttatacctgaatgtttgagtgagatcaatcttgaatttccctttctttgtatactctttcaaactaagctcatataattc |
147 |
Q |
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| T |
15779208 |
atgagaaagtaggctagaacttgtacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttc |
15779109 |
T |
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| Q |
148 |
tttagggtcattaggaacaactatatcaaattttcttatagctgccacaaataccttagccatgctaatgaaaggactccctttaatcaatttgtgtcta |
247 |
Q |
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| T |
15779108 |
ttttgggtcttcaggaacagttacaccccatttccttatagctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtcta |
15779009 |
T |
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| Q |
248 |
ta |
249 |
Q |
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|| |
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| T |
15779008 |
ta |
15779007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 15729044 - 15728987
Alignment:
| Q |
107 |
cctttctttgtatactctttcaaactaagctcatataattctttagggtcattaggaa |
164 |
Q |
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| T |
15729044 |
cctttctttgcatactcttccaaatcaagttcatatagttctttagggtcactaggaa |
15728987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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