View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_48 (Length: 256)
Name: NF9532_low_48
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 2509676 - 2509898
Alignment:
| Q |
22 |
taagaatggaaagttagataaattcattgtattgatgagtttggacagtgaatttatagtttttaaaaactctgatatgatgtaagcagccgactgaaaa |
121 |
Q |
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| T |
2509676 |
taagaatggaaagttagataaattcattgtattgatgagtttggacagtgaatttatagtttttaaaaactctgatatgatgtaagcagccgactgaaaa |
2509775 |
T |
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| Q |
122 |
tgacttagaagagcatacaagaaaagcatagggcataattccatcaaaatctgtgtttataaacaaacgaataattcttgattatttgatatgcctggtt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2509776 |
tgacttagaagagcatacaagaaaagcatagggcataattccatcaaaatctgtgtttataaacaaacgaataattcttgattatttgatatgcctggtt |
2509875 |
T |
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| Q |
222 |
tagattaaaagctagaattatct |
244 |
Q |
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|| |||||||||||||||||||| |
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| T |
2509876 |
taaattaaaagctagaattatct |
2509898 |
T |
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