View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_52 (Length: 243)
Name: NF9532_low_52
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50062246 - 50062020
Alignment:
| Q |
1 |
aaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacgg |
100 |
Q |
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| T |
50062246 |
aaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacgg |
50062147 |
T |
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| Q |
101 |
ttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnntcaagaaaggccaagctaaatgagctcagattctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
50062146 |
ttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctcagattctttc |
50062047 |
T |
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| Q |
201 |
gtttgaaggcaaaacaaaagatgtatt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50062046 |
gtttgaaggcaaaacaaaagatgtatt |
50062020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44141669 - 44141442
Alignment:
| Q |
1 |
aaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141669 |
aaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacgg |
44141570 |
T |
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| Q |
101 |
ttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaat-nnnnnnnnnnnntcaagaaaggccaagctaaatgagctcagattctat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
44141569 |
ttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagctcagattcttt |
44141470 |
T |
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| Q |
200 |
cgtttgaaggcaaaacaaaagatgtatt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44141469 |
cgtttgaaggcaaaacaaaagatgtatt |
44141442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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