View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_55 (Length: 240)

Name: NF9532_low_55
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_55
NF9532_low_55
[»] chr4 (3 HSPs)
chr4 (1-154)||(15879416-15879569)
chr4 (157-240)||(15567043-15567129)
chr4 (157-240)||(15579688-15579774)
[»] scaffold0770 (1 HSPs)
scaffold0770 (8-150)||(1484-1626)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-150)||(99788-99930)
[»] chr8 (1 HSPs)
chr8 (1-154)||(24487277-24487430)
[»] scaffold0503 (2 HSPs)
scaffold0503 (1-154)||(1256-1422)
scaffold0503 (1-154)||(5823-5989)
[»] scaffold0077 (1 HSPs)
scaffold0077 (66-154)||(315-403)
[»] chr7 (2 HSPs)
chr7 (99-154)||(42017132-42017187)
chr7 (157-195)||(36899197-36899235)
[»] scaffold0014 (1 HSPs)
scaffold0014 (157-195)||(4557-4595)
[»] chr6 (2 HSPs)
chr6 (157-195)||(15665508-15665546)
chr6 (33-97)||(18437332-18437396)
[»] chr3 (2 HSPs)
chr3 (157-195)||(19834215-19834253)
chr3 (33-97)||(14252925-14252989)
[»] chr1 (1 HSPs)
chr1 (48-97)||(13186321-13186370)
[»] scaffold0484 (1 HSPs)
scaffold0484 (157-240)||(10731-10816)
[»] chr5 (2 HSPs)
chr5 (157-195)||(29885459-29885497)
chr5 (157-195)||(29902035-29902073)
[»] scaffold0101 (1 HSPs)
scaffold0101 (99-154)||(15923-15976)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15879569 - 15879416
Alignment:
Q  1 acacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactac 100  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| ||||||  |||| ||||||||||||||    
T  15879569 acacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagccgcacttccaaaccggacacatcacagagtcgtcaccaaccacaactac 15879470  T
Q  101 aacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    |||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  15879469 aacacattcgttgtcgtcacaaacaacagcaaacaaccgggttcatccaaaggt 15879416  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 15567129 - 15567043
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgcc 240  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| ||||||||||||||||||||||||||||||||    
T  15567129 agaatcgagtagaggagaaaagaacaagtagaaggaaccgaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggtgcc 15567043  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 15579774 - 15579688
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgcc 240  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| |||||||||||||||||||||||| |||||||    
T  15579774 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaatcaaaaaaataagttgttagggttccggcgcgatggtgcc 15579688  T

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Target: scaffold0770 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 1484 - 1626
Alignment:
Q  8 aagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacat 107  Q
    |||||| ||||||||||||||||| |||||||| ||||  |||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||    
T  1484 aagccagaatcgcacatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaaccacaactacaacacat 1583  T
Q  108 ctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 150  Q
    | ||||||||| |||||||||||||||||||||||||||||||    
T  1584 ccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 1626  T

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Target: scaffold0029 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 99788 - 99930
Alignment:
Q  8 aagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacat 107  Q
    |||||| ||||||||||||||||| |||||||| ||||  |||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||    
T  99788 aagccagaatcgcacatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaaccacaactacaacacat 99887  T
Q  108 ctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaa 150  Q
    | ||||||||| |||||||||||||||||||||||||||||||    
T  99888 ccgttgccgtcacaaacaacagcaaacaaccgggttcatccaa 99930  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 24487430 - 24487277
Alignment:
Q  1 acacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactac 100  Q
    ||||||||| ||| ||||||||||| ||||| |||||||| ||||| |||| |||| |||||||  |||||| |||||||||||| ||||||||||| ||    
T  24487430 acacaagaatccagaatcgcacatccctaaggaacaacatcaactcgaagctgcacctccaaaccagacacatcacagaaccgtcaccaaccacaaccac 24487331  T
Q  101 aacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  24487330 aacacatccgttgccgtcacaaacaacaacaaacaaccgggttcatccaaaggt 24487277  T

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Target: scaffold0503 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1422 - 1256
Alignment:
Q  1 acacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggac-------------acaccacagaaccgtcgc 87  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||             ||| |||||||||||| |    
T  1422 acacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagctgcacttccaaaccggacttccaaaccggacacatcacagaaccgtcac 1323  T
Q  88 caaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  1322 caaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 1256  T

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Target: scaffold0503; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5989 - 5823
Alignment:
Q  1 acacaagaagccaaaatcgcacatcactaagaaacaacattaactcaaagccgcacttccaaactggac-------------acaccacagaaccgtcgc 87  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||             ||| |||||||||||| |    
T  5989 acacaagaagccagaatcgcacatcactaaggaacaacatcaactcgaagctgcacttccaaaccggacttccaaaccggacacatcacagaaccgtcac 5890  T
Q  88 caaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5889 caaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 5823  T

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Target: scaffold0077 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 315 - 403
Alignment:
Q  66 ggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  315 ggacacatcacagagccgtcaccaaccacaactacaacacatctgttgccgtcacaaacaacagcaaacaaccaagttcatccaaaggt 403  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 42017187 - 42017132
Alignment:
Q  99 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  42017187 acaacacatctgttgccgtcacaaacaacagcaagcaaccgggttcatccaaaggt 42017132  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 36899197 - 36899235
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  36899197 agaatcgagtagaggagaagagaacaagtagaaagaacc 36899235  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 4557 - 4595
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4557 agaatcgagtagaggagaaaagaacaagtagaaggaacc 4595  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 15665546 - 15665508
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15665546 agaatcgagtagaggagaaaagaacaagtagaaggaacc 15665508  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 18437332 - 18437396
Alignment:
Q  33 aacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 97  Q
    |||||||| ||||| ||||||||| ||||||| ||||||| |||| ||||||| |||||||||||    
T  18437332 aacaacatcaactcgaagccgcacgtccaaaccggacacatcacataaccgtcaccaaccacaac 18437396  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 19834215 - 19834253
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19834215 agaatcgagtagaggagaaaagaacaagtagaaggaacc 19834253  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 14252925 - 14252989
Alignment:
Q  33 aacaacattaactcaaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 97  Q
    |||||||| ||||| || |||||||||||||| ||||||| |||||||| ||| |||||||||||    
T  14252925 aacaacatcaactcgaatccgcacttccaaaccggacacatcacagaactgtcaccaaccacaac 14252989  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 13186321 - 13186370
Alignment:
Q  48 aagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 97  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  13186321 aagccgcacttccaaaccggacacatcacagaaccgtcaccaaccacaac 13186370  T

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Target: scaffold0484 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 10816 - 10731
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt--aaatataagttgttagggttccggcgcggtggtgcc 240  Q
    ||||||||||| ||||| ||||||||||||||| |||||        |  ||| ||||||||||||||||||||||||||||||||    
T  10816 agaatcgagtataggaggaaagaacaagtagaaagaaccaaaaaaatttaaaaaataagttgttagggttccggcgcggtggtgcc 10731  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 29885459 - 29885497
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  29885459 agaatcgagtagaggagaagagaacaagtagaaggaacc 29885497  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 29902035 - 29902073
Alignment:
Q  157 agaatcgagtagaggagaaaagaacaagtagaaggaacc 195  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  29902035 agaatcgagtagaggagaagagaacaagtagaaggaacc 29902073  T

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Target: scaffold0101 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 15976 - 15923
Alignment:
Q  99 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 154  Q
    |||||||||| || |||||| ||||||||||||  |||||||||||||||||||||    
T  15976 acaacacatccgtggccgtcacaaacaacagca--caaccgggttcatccaaaggt 15923  T

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