View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_56 (Length: 240)
Name: NF9532_low_56
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 39291599 - 39291768
Alignment:
| Q |
62 |
acataacttcttaaaacttccatatccaagtgtgtcaaagacgtctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtac------- |
154 |
Q |
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| T |
39291599 |
acataacttcttaaaacttccatatccaagtgtgtcaaagacgtctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtacacgaaga |
39291698 |
T |
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| Q |
155 |
aaacttgcagaagagactccaaaggaagttcgaatacattgacacccgtgcattgtatgagttagtagtt |
224 |
Q |
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| T |
39291699 |
aaacttgcagaagagactccaaaggaagttagaatacattgacacccgtgcattgtatgagttagtagtt |
39291768 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39291557 - 39291602
Alignment:
| Q |
1 |
ttcaaatatcaatgtcaagaagttcaaagacataatccagggacat |
46 |
Q |
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| T |
39291557 |
ttcaaataccaatgtcaagaagttcaaagacataatccagggacat |
39291602 |
T |
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