View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_58 (Length: 239)
Name: NF9532_low_58
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 7494344 - 7494514
Alignment:
| Q |
9 |
tagcagagacaaaataagcagaatacgatcctgtccctgcgaatagaatggaaacaatgagaagaaaagaagtttccataagaaaataagtcatcatg-t |
107 |
Q |
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| T |
7494344 |
tagcagagacaaaatatgcagaatacgatccagtccctgcgaatagaatggaaacaatgagaagaaaagaagtttccataagaaaataagtcatcatgtt |
7494443 |
T |
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| Q |
108 |
tttttcttcttcaatttgaattacatttgtggccaccttaaaagctatcaagcc--aaagaatggaaacaa |
176 |
Q |
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| T |
7494444 |
tttttcttcttcaatttgaattacatttgtggtcaccttaaaagctatcaagccaaaaagaatggaaacaa |
7494514 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 7491605 - 7491667
Alignment:
| Q |
114 |
ttcttcaatttgaattacatttgtggccaccttaaaagctatcaagccaaagaatggaaacaa |
176 |
Q |
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| T |
7491605 |
ttcttgaatttgaattacatttgtgatcaccttaaaaagtatcaagccaaagaatggaaacaa |
7491667 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 19158021 - 19158076
Alignment:
| Q |
121 |
atttgaattacatttgtggccaccttaaaagctatcaagccaaagaatggaaacaa |
176 |
Q |
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| T |
19158021 |
atttgaattacatttatgatcaccttaaatggtatcaagccaaagaatggaaacaa |
19158076 |
T |
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