View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_59 (Length: 239)

Name: NF9532_low_59
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_59
NF9532_low_59
[»] chr4 (2 HSPs)
chr4 (15-222)||(24695012-24695208)
chr4 (57-106)||(24707522-24707571)
[»] chr7 (3 HSPs)
chr7 (123-184)||(13326066-13326127)
chr7 (123-184)||(13338402-13338463)
chr7 (123-169)||(32636327-32636373)
[»] chr5 (1 HSPs)
chr5 (123-184)||(5667939-5668000)
[»] chr1 (2 HSPs)
chr1 (123-169)||(51285929-51285975)
chr1 (123-169)||(48491961-48492007)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 24695012 - 24695208
Alignment:
Q  15 gagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccnnnnnnnn 114  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24695012 gagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccaaaaaaga 24695111  T
Q  115 nnnnnnntgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacacaatcccaaagcaaataataccatag 214  Q
           |||||||||||||||||||||||||||           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24695112 caaaaaatgccctccacctcaattttgaaaccac-----------ccacaaatcttagctagataatatccacacaatcccaaagcaaataataccatag 24695200  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
Q  57 cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc 106  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  24707522 cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc 24707571  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 184  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  13326066 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 13326127  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 184  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  13338402 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 13338463  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 169  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||    
T  32636373 gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct 32636327  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc 184  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||    
T  5667939 gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc 5668000  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 169  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  51285975 gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct 51285929  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
Q  123 gccctccacctcaattttgaaaccacccaaatattgaccacaaatct 169  Q
    |||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  48491961 gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct 48492007  T

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