View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_60 (Length: 235)

Name: NF9532_low_60
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_60
NF9532_low_60
[»] scaffold0770 (1 HSPs)
scaffold0770 (16-145)||(1497-1626)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-145)||(99801-99930)
[»] chr4 (4 HSPs)
chr4 (16-149)||(15879416-15879549)
chr4 (152-235)||(15567043-15567129)
chr4 (152-235)||(15579688-15579774)
chr4 (28-68)||(3440213-3440254)
[»] chr8 (1 HSPs)
chr8 (16-149)||(24487277-24487410)
[»] scaffold0503 (2 HSPs)
scaffold0503 (50-149)||(1256-1355)
scaffold0503 (50-149)||(5823-5922)
[»] scaffold0077 (1 HSPs)
scaffold0077 (61-149)||(315-403)
[»] chr7 (2 HSPs)
chr7 (94-149)||(42017132-42017187)
chr7 (152-190)||(36899197-36899235)
[»] chr6 (3 HSPs)
chr6 (28-92)||(18437332-18437396)
chr6 (152-190)||(15665508-15665546)
chr6 (28-68)||(21962199-21962240)
[»] chr3 (2 HSPs)
chr3 (28-92)||(14252925-14252989)
chr3 (152-190)||(19834215-19834253)
[»] chr1 (1 HSPs)
chr1 (28-92)||(13186306-13186370)
[»] scaffold0014 (1 HSPs)
scaffold0014 (152-190)||(4557-4595)
[»] scaffold0484 (1 HSPs)
scaffold0484 (152-235)||(10731-10816)
[»] chr5 (2 HSPs)
chr5 (152-190)||(29885459-29885497)
chr5 (152-190)||(29902035-29902073)
[»] scaffold0101 (1 HSPs)
scaffold0101 (94-149)||(15923-15976)


Alignment Details
Target: scaffold0770 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 1497 - 1626
Alignment:
Q  16 acatcactaagaaacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgc 115  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||| ||||||||| |    
T  1497 acatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaaccacaactacaacacatccgttgccgtcac 1596  T
Q  116 aaacaacagcaaacaaccgggttcatccaa 145  Q
    ||||||||||||||||||||||||||||||    
T  1597 aaacaacagcaaacaaccgggttcatccaa 1626  T

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Target: scaffold0029 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 99801 - 99930
Alignment:
Q  16 acatcactaagaaacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgc 115  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||| ||||||||| |    
T  99801 acatcactaaggaacaacatcaacttgaagccgcacttccaaaccagacacatcacagaaccgtcaccaaccacaactacaacacatccgttgccgtcac 99900  T
Q  116 aaacaacagcaaacaaccgggttcatccaa 145  Q
    ||||||||||||||||||||||||||||||    
T  99901 aaacaacagcaaacaaccgggttcatccaa 99930  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 15879549 - 15879416
Alignment:
Q  16 acatcactaagaaacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgc 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||  |||| |||||||||||||||||||||  |||| |||| |    
T  15879549 acatcactaaggaacaacatcaactcgaagccgcacttccaaaccggacacatcacagagtcgtcaccaaccacaactacaacacattcgttgtcgtcac 15879450  T
Q  116 aaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    ||||||||||||||||||||||||||||||||||    
T  15879449 aaacaacagcaaacaaccgggttcatccaaaggt 15879416  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 15567129 - 15567043
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgcc 235  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| ||||||||||||||||||||||||||||||||    
T  15567129 agaatcgagtagaggagaaaagaacaagtagaaggaaccgaaaaaaatcaaaaaaataagttgttagggttccggcgcggtggtgcc 15567043  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 15579774 - 15579688
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt---aaatataagttgttagggttccggcgcggtggtgcc 235  Q
    |||||||||||||||||||||||||||||||||||||||        |   ||| |||||||||||||||||||||||| |||||||    
T  15579774 agaatcgagtagaggagaaaagaacaagtagaaggaaccaaaaaaaatcaaaaaaataagttgttagggttccggcgcgatggtgcc 15579688  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3440213 - 3440254
Alignment:
Q  28 aacaacatcaactcgaagccgcacttcca-aactggacacac 68  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  3440213 aacaacatcaactcgaagccgcacttccagaaccggacacac 3440254  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 24487410 - 24487277
Alignment:
Q  16 acatcactaagaaacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgc 115  Q
    ||||| ||||| ||||||||||||||||||| |||| |||||||  |||||| |||||||||||| ||||||||||| |||||||||| ||||||||| |    
T  24487410 acatccctaaggaacaacatcaactcgaagctgcacctccaaaccagacacatcacagaaccgtcaccaaccacaaccacaacacatccgttgccgtcac 24487311  T
Q  116 aaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    |||||||| |||||||||||||||||||||||||    
T  24487310 aaacaacaacaaacaaccgggttcatccaaaggt 24487277  T

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Target: scaffold0503 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 1355 - 1256
Alignment:
Q  50 acttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  1355 acttccaaaccggacacatcacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 1256  T

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Target: scaffold0503; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 5922 - 5823
Alignment:
Q  50 acttccaaactggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5922 acttccaaaccggacacatcacagaaccgtcaccaaccacaactacaacacatccgttgccgtcacaaacaacagcaaacaaccgggttcatccaaaggt 5823  T

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Target: scaffold0077 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 315 - 403
Alignment:
Q  61 ggacacaccacagaaccgtcgccaaccacaactacaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  315 ggacacatcacagagccgtcaccaaccacaactacaacacatctgttgccgtcacaaacaacagcaaacaaccaagttcatccaaaggt 403  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 42017187 - 42017132
Alignment:
Q  94 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  42017187 acaacacatctgttgccgtcacaaacaacagcaagcaaccgggttcatccaaaggt 42017132  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 36899197 - 36899235
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  36899197 agaatcgagtagaggagaagagaacaagtagaaagaacc 36899235  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 18437332 - 18437396
Alignment:
Q  28 aacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 92  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||| ||||||| |||||||||||    
T  18437332 aacaacatcaactcgaagccgcacgtccaaaccggacacatcacataaccgtcaccaaccacaac 18437396  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 15665546 - 15665508
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15665546 agaatcgagtagaggagaaaagaacaagtagaaggaacc 15665508  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 21962199 - 21962240
Alignment:
Q  28 aacaacatcaactcgaagccgcacttcca-aactggacacac 68  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  21962199 aacaacatcaactcgaagccgcacttccagaaccggacacac 21962240  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 14252925 - 14252989
Alignment:
Q  28 aacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 92  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||||||    
T  14252925 aacaacatcaactcgaatccgcacttccaaaccggacacatcacagaactgtcaccaaccacaac 14252989  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 19834215 - 19834253
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19834215 agaatcgagtagaggagaaaagaacaagtagaaggaacc 19834253  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 13186306 - 13186370
Alignment:
Q  28 aacaacatcaactcgaagccgcacttccaaactggacacaccacagaaccgtcgccaaccacaac 92  Q
    ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  13186306 aacaatatcaattcgaagccgcacttccaaaccggacacatcacagaaccgtcaccaaccacaac 13186370  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 4557 - 4595
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4557 agaatcgagtagaggagaaaagaacaagtagaaggaacc 4595  T

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Target: scaffold0484 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 10816 - 10731
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaaccnnnnnnnnt--aaatataagttgttagggttccggcgcggtggtgcc 235  Q
    ||||||||||| ||||| ||||||||||||||| |||||        |  ||| ||||||||||||||||||||||||||||||||    
T  10816 agaatcgagtataggaggaaagaacaagtagaaagaaccaaaaaaatttaaaaaataagttgttagggttccggcgcggtggtgcc 10731  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 29885459 - 29885497
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  29885459 agaatcgagtagaggagaagagaacaagtagaaggaacc 29885497  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 29902035 - 29902073
Alignment:
Q  152 agaatcgagtagaggagaaaagaacaagtagaaggaacc 190  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  29902035 agaatcgagtagaggagaagagaacaagtagaaggaacc 29902073  T

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Target: scaffold0101 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 15976 - 15923
Alignment:
Q  94 acaacacatctgttgccgtcgcaaacaacagcaaacaaccgggttcatccaaaggt 149  Q
    |||||||||| || |||||| ||||||||||||  |||||||||||||||||||||    
T  15976 acaacacatccgtggccgtcacaaacaacagca--caaccgggttcatccaaaggt 15923  T

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