View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9532_low_61 (Length: 235)

Name: NF9532_low_61
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9532_low_61
NF9532_low_61
[»] chr6 (4 HSPs)
chr6 (17-216)||(9547455-9547653)
chr6 (25-209)||(19770317-19770500)
chr6 (30-216)||(22468603-22468786)
chr6 (25-115)||(19565537-19565627)
[»] chr4 (10 HSPs)
chr4 (25-210)||(23972671-23972855)
chr4 (25-211)||(14644449-14644634)
chr4 (31-210)||(15703274-15703451)
chr4 (28-211)||(19613211-19613393)
chr4 (17-216)||(13885341-13885536)
chr4 (25-210)||(11150153-11150336)
chr4 (62-216)||(25127474-25127628)
chr4 (70-211)||(4529661-4529801)
chr4 (72-143)||(18874736-18874807)
chr4 (157-216)||(18875009-18875068)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-211)||(172658-172843)
[»] chr7 (6 HSPs)
chr7 (25-210)||(11509938-11510121)
chr7 (25-209)||(18148927-18149110)
chr7 (25-216)||(21860727-21860915)
chr7 (93-211)||(22530312-22530428)
chr7 (25-122)||(34705504-34705601)
chr7 (146-207)||(34705727-34705788)
[»] scaffold0498 (1 HSPs)
scaffold0498 (25-216)||(11854-12043)
[»] chr5 (3 HSPs)
chr5 (17-217)||(29497352-29497549)
chr5 (28-217)||(32039479-32039667)
chr5 (25-216)||(39437254-39437445)
[»] chr8 (5 HSPs)
chr8 (25-209)||(4860614-4860795)
chr8 (25-207)||(9882075-9882254)
chr8 (28-216)||(40387343-40387529)
chr8 (25-115)||(17289326-17289416)
chr8 (158-209)||(42145275-42145326)
[»] chr3 (10 HSPs)
chr3 (31-210)||(3473104-3473281)
chr3 (28-217)||(15778587-15778775)
chr3 (20-211)||(19595547-19595737)
chr3 (25-209)||(39728955-39729138)
chr3 (25-207)||(18539417-18539597)
chr3 (25-112)||(3413897-3413983)
chr3 (94-198)||(3413775-3413878)
chr3 (82-205)||(18694868-18694990)
chr3 (82-205)||(18710387-18710509)
chr3 (109-209)||(3289390-3289487)
[»] chr1 (7 HSPs)
chr1 (28-217)||(41138277-41138465)
chr1 (25-217)||(23633533-23633724)
chr1 (25-209)||(52272482-52272662)
chr1 (25-209)||(12784834-12785017)
chr1 (25-115)||(29447135-29447225)
chr1 (82-209)||(18515009-18515135)
chr1 (25-131)||(89714-89818)
[»] chr2 (9 HSPs)
chr2 (28-217)||(16092076-16092262)
chr2 (25-210)||(34892022-34892202)
chr2 (28-211)||(20264969-20265151)
chr2 (25-173)||(16933123-16933268)
chr2 (28-216)||(20178452-20178637)
chr2 (95-189)||(38991375-38991466)
chr2 (82-209)||(32625644-32625770)
chr2 (56-115)||(24851737-24851796)
chr2 (25-140)||(22385319-22385433)
[»] scaffold0281 (1 HSPs)
scaffold0281 (25-209)||(406-588)
[»] scaffold0103 (1 HSPs)
scaffold0103 (25-173)||(17008-17153)
[»] scaffold0024 (2 HSPs)
scaffold0024 (28-209)||(106524-106697)
scaffold0024 (28-96)||(108891-108958)
[»] scaffold0043 (1 HSPs)
scaffold0043 (29-211)||(67073-67252)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 9547455 - 9547653
Alignment:
Q  17 cacagacggataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaac 116  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  9547455 cacagacggagaatattcacatttaaatataaaccttc-tttaataaaaataaaataggcattaatcaacatcttataataacatataagcatcaacaac 9547553  T
Q  117 atttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9547554 atttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacagaatcatatagaagcacgtcattgaatatcacatctttaaatagtcacac 9547653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 19770500 - 19770317
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaa-tcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    ||||| |||||||||||||||||||  ||  ||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  19770500 gataacattcacatttaaatataaaatttcatttaataaaaaatcaaatagacatcaattaacatcttataataacatataagcatcaacaacatttaag 19770401  T
Q  124 tatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
     |||||||||| |||||   | |||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  19770400 aatatcaagtagacatt--aataaaataaaaatcattcacacataatcatatagcagcatgtcattgaatatcacatctttaaata 19770317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 22468603 - 22468786
Alignment:
Q  30 tattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatatc 129  Q
    ||||||||||||||||||||  ||  | |||| |||||| ||||||||  ||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  22468603 tattcacatttaaatataaatgttcatctaat-aaaatc-aataggcagaaatcaacatcttataataacatgtaagcatcaacaacatttaagaatatc 22468700  T
Q  130 aagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    || || ||||||| | |||||||  | ||||||||||||| ||||  ||| ||| ||||| |||| |||||||| ||||||| ||||    
T  22468701 aaatagacattta-acaaaataccgaccattcacacataagcataaggaaacacatcattgaataacacatcttaaaatagttacac 22468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 19565627 - 19565537
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaa 115  Q
    ||||||||| |||||||||||||||  ||  |||||||||||||||||||| || ||||||||||| |||||||||| | |||| ||||||    
T  19565627 gataatattgacatttaaatataaaatttcatttaataaaaatcaaataggtatgaatcaacatcttataataacatgtgagcaacaacaa 19565537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 23972671 - 23972855
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| |||||||||||||||||||  ||  |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||     
T  23972671 gataacattcacatttaaatataaaatttcatttaataaaaatcaaataggtatcaatcaacatctcataataacatataagcatcaacaacatttaaga 23972770  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
    |||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23972771 atatcaagtagacattaataaaaaa-acaaatcattcacacataatcatatagaagcacgtcattgaatatcacatctttaaatag 23972855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 14644449 - 14644634
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||||||| ||| |||||||||||  ||  ||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  14644449 gataatatttacacttaaatataaaatttcatttaaaaaaaatcaaatagacatcaatcaacatcttataataacatataagcatcaacaacatttaaga 14644548  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  14644549 atatcaagtagaca-ttaaaaaaaatacaaatcattcacacataatcatatagaagcacgtcattgagtatcacatctttaaatagt 14644634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 15703274 - 15703451
Alignment:
Q  31 attcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatatca 130  Q
    |||||||||||||||||||  ||  |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  15703274 attcacatttaaatataaaatttcatttaataaaaatcaaataggtatcaatcaacatcttataataacatataagcatcaacaacatttaagaatatca 15703373  T
Q  131 agtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
    |||| |||||   | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  15703374 agtagacatt--aataaaatacaaatcattcacacataatcatatagaagcacatcattgaatatcacatctttaaatag 15703451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 19613393 - 19613211
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||| ||| |||||||||||||  ||  ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| | |||||||||| |||    
T  19613393 aataatcatatttaaatataaagtttcatttaataaaaatcaaataggcatcaaccaacatcttataataacatataagcatcgagaacatttaagaata 19613294  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||||  || ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  19613293 tcaagtaaccacttag-caaaatacaaatcattcacacataatcatatagaagcacatcattaaatatcacatcttaaaatagt 19613211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 13885536 - 13885341
Alignment:
Q  17 cacagacggataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaac 116  Q
    |||||||  ||||||| |||||||||| ||  | |||  |||||||||| |||| ||||||||||||||||||| ||| ||||||| ||| |||||||      
T  13885536 cacagacacataatatgcacatttaaacatgtaacttcatttaataaaa-tcaa-taggcattaatcaacatcttata-taacatacaagtatcaacact 13885440  T
Q  117 atttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  13885439 atttaagtatatcaagtatacatttagaaaaa-tacagatcattcacacataatcatatagaagctcatcaataaatatcacatctttaaatagtcacac 13885341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 11150153 - 11150336
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaa-atcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    ||||| |||||||||||||||||||  ||  |||||||||| ||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||    
T  11150153 gataacattcacatttaaatataaaatttcatttaataaaacatcaaataggcatcaatcaacatctattaataacatatacg-atcaacaacatttaag 11150251  T
Q  124 tatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
     |||||||||| ||  | ||  |||||||||||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||||    
T  11150252 aatatcaagtagacgctaag--aaaatacaaatcattcacacataatcttatatcagcatgtcattgaatatcacatatttaaatag 11150336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 25127628 - 25127474
Alignment:
Q  62 aaaaatcaaataggcattaatcaacatctaata--ataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcat 159  Q
    ||||| ||||||| ||| ||||||||||| |||  ||| ||||||| ||||||||||||||||| |||| ||||| ||||| || |||| ||||||||||    
T  25127628 aaaaaacaaatagacatcaatcaacatcttatataatagcatataaccatcaacaacatttaagaatattaagtagacatt-agtaaaa-tacaaatcat 25127531  T
Q  160 tcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    ||||||||||| |||||||||||  | ||| ||||||||||||||||||||| ||||    
T  25127530 tcacacataattatatagaagcatattattgaatatcacatctttaaatagttacac 25127474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 4529661 - 4529801
Alignment:
Q  70 aataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataa 169  Q
    |||| |||||||| ||||||| |||||||||| |||| ||||||| || ||||| ||||||||||  ||||||| |||  |||| | ||||||  |||||    
T  4529661 aatatgcattaattaacatcttataataacatgtaagtatcaacatcaattaagaatatcaagtaggcatttagcaaag-tacataccattcatgcataa 4529759  T
Q  170 tcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
     || ||| || ||| ||||| |||||||||||||||||||||    
T  4529760 ccacatataatcacatcattgaatatcacatctttaaatagt 4529801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 18874736 - 18874807
Alignment:
Q  72 taggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttag 143  Q
    ||||||| ||||||||||| ||| || ||| ||||||| |||| |||||||| |||||||||| ||||||||    
T  18874736 taggcatcaatcaacatcttatattagcatgtaagcattaacaccatttaagaatatcaagtagacatttag 18874807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 18875009 - 18875068
Alignment:
Q  157 cattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    ||||||||||||| ||||||||| |||  ||||||||||| |||||||||||||| ||||    
T  18875009 cattcacacataaccatatagaaacacaacattaaatatctcatctttaaatagttacac 18875068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 172843 - 172658
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||||||| ||| |||||||||||  ||  ||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  172843 gataatatttacacttaaatataaaatttcatttaaaaaaaatcaaatagacatcaatcaacatcttataataacatataagcatcaacaacatttaaga 172744  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  172743 atatcaagtagaca-ttaaaaaaaatacaaatcattcacacataatcatatagaagcacgtcattgagtatcacatctttaaatagt 172658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 11510121 - 11509938
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| ||||||||||| |||||||  ||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||     
T  11510121 gataacattcacatttagatataaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagcatcaataacatttaaga 11510022  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
    |||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11510021 atatcaagtagacatt--aataaaatacaaatcattcacacataatcatatagaagcacgtcattgaatatcacatctttaaatag 11509938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 18149110 - 18148927
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaa-tcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    ||||| |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||    
T  18149110 gataacattcacatttaaatataaaatttcatttaataaaaaatcaaataggcatcaattatcatcttataataacatataagcatcaacaacatttaag 18149011  T
Q  124 tatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
     |||||||||| |||||   | |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  18149010 aatatcaagtagacatt--aataaaatacaaatcattcacacataatcatatagcagcatgtcattgaatatcacatctttaaata 18148927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 21860915 - 21860727
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||||||||||||||||| ||| || ||  |||||| ||| |||| ||||||  ||||||||||| || || |||| ||| ||||||||||||||| |     
T  21860915 gataatattcacatttaaacatatactttcatttaatgaaa-tcaa-taggcaccaatcaacatcttatgatgacatgtaaacatcaacaacatttacga 21860818  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||||||||| | |||||| |||| || | ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||    
T  21860817 atatcaagtagaaatttagcaaaa-tatagatcattcacacataatcatatagaagcacatcattgaatatcacgtctttaaatagttacac 21860727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 22530428 - 22530312
Alignment:
Q  93 taataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaa 192  Q
    ||||||| |||||| |||||||||||||||| |||||||||| ||||| | ||||  |||||||||||||||| ||||||||||||||||||||||| ||    
T  22530428 taataacttataagaatcaacaacatttaagaatatcaagtagacattaataaaa--tacaaatcattcacacgtaatcatatagaagcacgtcattgaa 22530331  T
Q  193 tatcacatctttaaatagt 211  Q
    ||| |||||||||||||||    
T  22530330 tattacatctttaaatagt 22530312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 34705504 - 34705601
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaa 122  Q
    |||||||||||||||||||||||||  ||  |||| |||||||||||||||| | |||||||||||  |||||||||||||| |||||||||||||||    
T  34705504 gataatattcacatttaaatataaaatttcatttagtaaaaatcaaataggcgtcaatcaacatcttgtaataacatataagtatcaacaacatttaa 34705601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 34705727 - 34705788
Alignment:
Q  146 aaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaa 207  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||    
T  34705727 aaaatacaaatcattcacacataatcatgtagaagcatgtcatcgaatatcacatctttaaa 34705788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 11854 - 12043
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||     
T  11854 gataatattcacatttaaatataaaatttcatttaataaaaatcaaataggcatcaatcaacgtcttataataacatataagcatcaacaacatttaaga 11953  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||||||||| |||||   | ||||||||||||||||||||||||| |||||||||||||||||| |||  |||||| ||||||||| ||||    
T  11954 atatcaagtagacatt--aataaaatacaaatcattcacacataataatatagaagcacgtcattgaatgacacatccttaaatagttacac 12043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 29497549 - 29497352
Alignment:
Q  17 cacagacggataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaac 116  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||||||||| || |||| ||||||||||| |||  |||||| ||| ||||||| |    
T  29497549 cacatacgaataatattcacatttaaatataaaccttcgttttataaaaatcaa-tatgcatgaatcaacatcttatac-aacatacaagtatcaacacc 29497452  T
Q  117 atttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||    
T  29497451 atttaagtatatcaagtacacattta-aaaaaatacagatcattcacacataatcatatagaagcacatcattgaatatcacatcttaaaatagttacac 29497353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 32039479 - 32039667
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||| |||||||||||||  ||  |||||||||||||||||||| || || |||||||| ||||||||||||||||||| | |||||||||| |||    
T  32039479 aatattcatatttaaatataaagtttcatttaataaaaatcaaataggaatcaaccaacatcttataataacatataagcatcgagaacatttaagaata 32039578  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacact 217  Q
    |||||||  || |||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  32039579 tcaagtaaccacttagcaaaa-tacaaatcattcacacataatcatatagaagcacatcattaaatatcacatcttaaaatagttacact 32039667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 39437445 - 39437254
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaa-tcaaataggcattaatcaacatctaata--ataacatataagcatcaacaacattta 121  Q
    |||||||||||||||||||||||||  ||   |||||||||| |||||  | ||| ||||||||||| |||  ||| |||||||||||||||||||||||    
T  39437445 gataatattcacatttaaatataaaatttcaattaataaaaaatcaaactgacatcaatcaacatcttatataatagcatataagcatcaacaacattta 39437346  T
Q  122 agtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    || |||||||||| ||||| || |||| ||||| |||||||||||||||||||||||||||  ||||| ||||||  ||||||||||||| ||||    
T  39437345 agaatatcaagtagacatt-agtaaaa-tacaa-tcattcacacataatcatatagaagcatatcattgaatatcgtatctttaaatagttacac 39437254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 4860795 - 4860614
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| |||||||||||||||||||  ||  ||||||||||||||||||||||| |||||| || || || ||||||||||||||||||||||||||||     
T  4860795 gataacattcacatttaaatataaaatttcatttaataaaaatcaaataggcatcaatcaatattta-tagtaacatataagcatcaacaacatttaaga 4860697  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
    |||||||||| ||||| | ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4860696 atatcaagtagacattaataaaa--tacaaatcattcacacataatcatatagaagcacgtcattgaatatcacatctttaaata 4860614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 9882075 - 9882254
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| |||||||||||||||||||  ||  |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||     
T  9882075 gataacattcacatttaaatataaaatttcatttaataaaaatcaaataggaatcaatcaacatctcataataacatataagcatcaacaacatttaaga 9882174  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaa 207  Q
    |||||||||| | |||   | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9882175 atatcaagtagatatt--aataaaatac-aatcattcacacataatcatatagaagcacgtcattgaatatcacatctttaaa 9882254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 40387343 - 40387529
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  40387343 aatattcacatttaaatataaaattttatttaataaaaatcaaataggcatcaatcaacatcttataataacatataaacatcaacaacatttaagaata 40387442  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |||| || | |||   | |||||||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  40387443 tcaattagatatt--aataaaatacaaatcattcccaaataatcatatagatgcacgtcattgaatatcacatctttaaatagttacac 40387529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 17289326 - 17289416
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaa 115  Q
    |||||||||||||||| |||||| |  ||  |||| |||||||| ||||||||| ||||||||||| |||||||||| | | |||||||||    
T  17289326 gataatattcacatttgaatatataatttaatttagtaaaaatctaataggcatcaatcaacatcttataataacatgtgaacatcaacaa 17289416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 42145275 - 42145326
Alignment:
Q  158 attcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
    |||||||||||||||||||||||||| ||||  | |||||| ||||||||||    
T  42145275 attcacacataatcatatagaagcacatcatcgagtatcacgtctttaaata 42145326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 3473281 - 3473104
Alignment:
Q  31 attcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatatca 130  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  3473281 attcacatttaaatataaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataagatataagcatcaacaacatttaagaatatca 3473182  T
Q  131 agtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
    |||| |||||   | |||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||    
T  3473181 agtagacatt--aataaaatacaaatcattcacacataatcatattgaaacacatcattgaatatcacatctttaaatag 3473104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 15778775 - 15778587
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||| |||||||||||||  ||  |||||||||||||||||||| || || |||||||| ||||||||||||||||||| | |||||||||| |||    
T  15778775 aatattcatatttaaatataaagtttcatttaataaaaatcaaataggaatcaaccaacatcttataataacatataagcatcgagaacatttaagaata 15778676  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacact 217  Q
    |||||||  || ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  15778675 tcaagtaaccactta-aaaaaatacaaatcaatcacacataatcatatagaagcacatcattaaatatcacatcttaaaatagttacact 15778587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 19595547 - 19595737
Alignment:
Q  20 agacggataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatt 119  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||| ||| ||||||| ||| |||| || |||     
T  19595547 agacagataatattcacatttaaatataaaccttcatttaataaaaatcaa-taggcatcaatcaacatcttata-taacatacaagtatcatcaccatc 19595644  T
Q  120 taagtatatcaagtacacatttagaaaaaa-tacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||  | ||| |||||| ||||||||||||||    
T  19595645 taagtatatcaagtacacatttagaaaaaaatacagatcattcacacataatcaaatagaagcaaattattgaatatcccatctttaaatagt 19595737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 39729138 - 39728955
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaa-tcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    ||||| |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  39729138 gataacattcacatttaaatataaaatttcatttaataaaaaatcaaataggcatcaatcaacatcttataagaacatataagcatcaacaacatttaag 39729039  T
Q  124 tatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
     |||||||||| |||||   | |||||||||||||||| ||||||||||||||  | || |||||| |||||||||||||||||||    
T  39729038 aatatcaagtagacatt--aataaaatacaaatcattcgcacataatcatatatcaacatgtcattgaatatcacatctttaaata 39728955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 18539597 - 18539417
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||| |||| |||||||||||||  ||   |||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||     
T  18539597 gataatgttcatatttaaatataaaatttcacttaataaaaatcaaataggcgtcaatcaacatcttataatgacatataagcatcaacaacatttaaga 18539498  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaa 207  Q
    |||||||||| ||| ||||  ||||||||||| |||| |||||||||||||||||| |||||||| |||||| ||||||||||    
T  18539497 atatcaagtagaca-ttag-taaaatacaaattattcccacataatcatatagaagaacgtcattgaatatcgcatctttaaa 18539417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 3413983 - 3413897
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaa 112  Q
    |||||||||||||||||||||||||| ||  ||||||||||||| ||||||||| |||||| || | | |||||||||||||||||||    
T  3413983 gataatattcacatttaaatataaacgttcatttaataaaaatc-aataggcatcaatcaatatattacaataacatataagcatcaa 3413897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 3413878 - 3413775
Alignment:
Q  94 aataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaat 193  Q
    ||||||||||||||||||| | |||||||| || ||||||| ||||||||  ||||| || |||||||||||| |||  ||||||||||| | ||| |||    
T  3413878 aataacatataagcatcaataccatttaagaatgtcaagtaaacatttag-taaaatgcagatcattcacacacaattgtatagaagcacataattgaat 3413780  T
Q  194 atcac 198  Q
    |||||    
T  3413779 atcac 3413775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 18694990 - 18694868
Alignment:
Q  82 tcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagc 181  Q
    ||||||||  |||||||||| | ||||||||||||||||||| |||| ||  | |||| || | |||||||| || |||||||||| | ||| ||||| |    
T  18694990 tcaacatcctataataacatgtgagcatcaacaacatttaagaatataaaaaagacatcta-acaaaatacatataattcacacatgaccatttagaatc 18694892  T
Q  182 acgtcattaaatatcacatcttta 205  Q
    || ||||| |||||||||||||||    
T  18694891 acatcattgaatatcacatcttta 18694868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 18710509 - 18710387
Alignment:
Q  82 tcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagc 181  Q
    ||||||||  |||||||||| | ||||||||||||||||||| |||| ||  | |||| || | |||||||| || |||||||||| | ||| ||||| |    
T  18710509 tcaacatcctataataacatgtgagcatcaacaacatttaagaatataaaaaagacatcta-acaaaatacatataattcacacatgaccatttagaatc 18710411  T
Q  182 acgtcattaaatatcacatcttta 205  Q
    || ||||| |||||||||||||||    
T  18710410 acatcattgaatatcacatcttta 18710387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 3289390 - 3289487
Alignment:
Q  109 tcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaat 208  Q
    ||||||||||||||| |||||||  | ||||||||  |||||||  | ||||| ||||| ||||| ||||||||| ||||| |||||||||| |||||||    
T  3289390 tcaacaacatttaagaatatcaaaaagacatttag-caaaatac--accattcgcacatgatcatttagaagcacatcattgaatatcacatttttaaat 3289486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 41138465 - 41138277
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||| |||||||||||||  ||  ||||||||||||||||||||||| || |||||| | ||||||||||||||||||| | ||| |||||| |||    
T  41138465 aatattcatatttaaatataaagtttaatttaataaaaatcaaataggcatcaaccaacattttataataacatataagcatcgagaacttttaagaata 41138366  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacact 217  Q
    |||||||  ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  41138365 tcaagtaaccatttagcaaaa-tacaaatcattcacacataatcatatagaagcacatcattaaatatcacatcttaaaataatcacact 41138277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 23633724 - 23633533
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| |||||||||||||||||||  ||  |||||||||| ||||||| |||| || |||||||| ||||||||||||||||||| | ||||||||||     
T  23633724 gataacattcacatttaaatataaagtttcatttaataaaagtcaaataagcatcaaccaacatcttataataacatataagcatcgagaacatttaaga 23633625  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacact 217  Q
    ||||||||||  || ||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||    
T  23633624 atatcaagtaaccacttag-taaaatacaaatcattcacacataatcatatagaagcatatcattaaatatcacatcttaaaatagttacact 23633533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 52272482 - 52272662
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||||||||| || |||||||| ||| ||||||||||||||||     
T  52272482 gataatattcacatttgaatataaaccttcatttaataaaaatc-aataggcatcaatcaacatcttat-ataacatacaagtatcaacaacatttaaga 52272579  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
    ||||||||||  || ||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  52272580 atatcaagtaggca-ttag-taaaatacaaatcattcacacataatcatatagaagcacctcattgaatatcgcatctttaaata 52272662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 12784834 - 12785017
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaa-atcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    ||||| |||||||||||||||||||   |  |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  12784834 gataacattcacatttaaatataaaatatcatttaataaaaaatcaaataggcatcaatcaacatcttataataacatataagcatcaacaacatttaag 12784933  T
Q  124 tatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
     |||||||||| |||||   | ||||| |||||| ||||||||||||||||||| |||| | |||  |||||||||||||||||||    
T  12784934 aatatcaagtagacatt--aataaaatgcaaatcgttcacacataatcatatagcagcatgccatcgaatatcacatctttaaata 12785017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 29447225 - 29447135
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaa 115  Q
    |||||||||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||    
T  29447225 gataatattcacatttaaatataaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatgtgagcatcaacaa 29447135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 18515135 - 18515009
Alignment:
Q  82 tcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagc 181  Q
    ||||||||| |||||||||| | ||||||||||||||||||| |||||||  | |||| ||| |||| ||||  |||||||||||| | ||| |||||||    
T  18515135 tcaacatcttataataacatgtgagcatcaacaacatttaagaatatcaaaaatacatctagcaaaa-tacatttcattcacacatgaccatttagaagc 18515037  T
Q  182 acgtcattaaatatcacatctttaaata 209  Q
    || ||||| |||||||||||||||||||    
T  18515036 acatcattgaatatcacatctttaaata 18515009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 89714 - 89818
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaa-ataggcattaatcaacatctaataataacatataagcatcaacaacatttaag 123  Q
    |||| |||||||||||||| ||| |||||  |||||||||| |||| |||   |||| ||||||||| |||||||||| | |||||||||||||||||||    
T  89714 gatactattcacatttaaacatataccttcatttaataaaa-tcaacatat--attagtcaacatcttataataacatgtgagcatcaacaacatttaag 89810  T
Q  124 tatatcaa 131  Q
     |||||||    
T  89811 aatatcaa 89818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 16092076 - 16092262
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||| |||||||||||||  ||| |||||||||| |||||||||||| || |||||||| ||||||||||||||||||| | |||||||||| |||    
T  16092076 aatattcatatttaaatataaagtttgatttaataaaa-tcaaataggcatcaaccaacatcttataataacatataagcatcgagaacatttaagaata 16092174  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacact 217  Q
    |||||||  || |||| |||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||    
T  16092175 tcaagtaaccacttagcaaaaa--caaatcattcacacataatcatatataagcacatcattaaatatcacatcttaaaatagttacact 16092262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 34892022 - 34892202
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    ||||| |||||||||||||||||||  ||  ||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||     
T  34892022 gataacattcacatttaaatataaaatttcctttaataaaaatcaaataggcatcaatcaaaatcatataataacatataagcatcaacaacatttaaga 34892121  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatag 210  Q
    || ||||||| |||||   | |||||||||||||||||||||||||||||||||||||||   |  ||||||||||||||||||||    
T  34892122 atgtcaagtagacatt--aataaaatacaaatcattcacacataatcatatagaagcacg---tagaatatcacatctttaaatag 34892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 20265151 - 20264969
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||| |||||||||||||  ||  ||||||||||||| ||||| ||| ||  ||||||| ||||||||||||||||||| | |||||||||| |||    
T  20265151 aatattcatatttaaatataaagtttcatttaataaaaatcgaatagacatcaactaacatctcataataacatataagcatcgataacatttaagaata 20265052  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||||  |||||||  |||||||| |||||||||||||||||||||| |  ||| ||||||||||||||||||| |||||||    
T  20265051 tcaagtaaccatttag-caaaatacagatcattcacacataatcatataaacacacatcattaaatatcacatcttaaaatagt 20264969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 16933268 - 16933123
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||||||||||| ||||||  ||  ||||||||||||||| ||||||| |||| |||||| |||||||||||||| | |||||||||||||||     
T  16933268 gataatattcacatttaa-tataaatatttatttaataaaaatcaa-taggcatcaatcgacatcttataataacatataaacgtcaacaacatttaaga 16933171  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcat 173  Q
    |||||||||| ||||||||  |||||||||||||| ||||||| |||||    
T  16933170 atatcaagtagacatttag-taaaatacaaatcatccacacatcatcat 16933123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 20178452 - 20178637
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtata 127  Q
    |||||||||||||||| ||| || ||  |||| ||||| |||| ||||||| ||||||||||| | ||| |||  ||||||||||||||||||||| |||    
T  20178452 aatattcacatttaaacatatacattcatttactaaaa-tcaa-taggcatcaatcaacatcttaaaatgacaggtaagcatcaacaacatttaagaata 20178549  T
Q  128 tcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagtcacac 216  Q
    |  | || || |||||  |||||||||| | ||   |||||| ||||||||||||| ||||| |||| |||||||||||||||| ||||    
T  20178550 ttgaataaacctttag-caaaatacaaaacctttttacataaccatatagaagcacatcattgaatagcacatctttaaatagttacac 20178637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 38991375 - 38991466
Alignment:
Q  95 ataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcatt 189  Q
    |||||||| ||| ||||||| ||||||||||||| ||| ||||||||| ||||||| ||||||| ||||||  |||||||||||||||| |||||    
T  38991375 ataacatacaagtatcaacaccatttaagtatattaagcacacattta-aaaaaatgcaaatcaatcacac--aatcatatagaagcacatcatt 38991466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 32625770 - 32625644
Alignment:
Q  82 tcaacatctaataataacatataagcatcaacaacatttaagtatatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagc 181  Q
    ||||||||| ||||||| || | ||||||||||||||||||| |||||||  | |||| |||  |||||||| || |||| ||||| | ||| ||||| |    
T  32625770 tcaacatcttataataatatgtgagcatcaacaacatttaagaatatcaaaaagacatctag-caaaatacatattattcgcacatgaccatttagaaac 32625672  T
Q  182 acgtcattaaatatcacatctttaaata 209  Q
    || | ||| |||||||||||||||||||    
T  32625671 acataattgaatatcacatctttaaata 32625644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 24851796 - 24851737
Alignment:
Q  56 tttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaa 115  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||| | | |||||||||    
T  24851796 tttaataaaaatcaaatagacatcaatcaacatcttataataacatgtgaacatcaacaa 24851737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 22385319 - 22385433
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||| ||||||||||||||  |   ||||||||||||||  ||  ||  ||||||||||| |||||||||  ||||||| |||| ||||| ||     
T  22385319 gataatattcccatttaaatataaatgtccatttaataaaaatcag-taaacaacaatcaacatcttataataacaactaagcattaacatcatttcaga 22385417  T
Q  125 atatcaagtacacatt 140  Q
    |||||||||| |||||    
T  22385418 atatcaagtagacatt 22385433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 406 - 588
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||||||||| ||||||||  ||  |||||||||||| |||| ||||| ||||||| ||| |||||| |||||||||||||||||||||||||     
T  406 gataatattcacatttgaatataaagtttcatttaataaaaattaaatcggcatcaatcaacgtcttataatagcatataagcatcaacaacatttaaga 505  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
    ||||| | || ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  506 atatcgactagaca-ttag-taaaatacaaatcattcacacataatcatatagaagcacatcattgaatatcacatctttaaata 588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 17008 - 17153
Alignment:
Q  25 gataatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagt 124  Q
    |||||||||||||||||| ||||||  ||  ||||||||||||||| ||||||| |||| |||||| |||||||||||||| | |||||||||||||||     
T  17008 gataatattcacatttaa-tataaatatttatttaataaaaatcaa-taggcatcaatcgacatcttataataacatataaacgtcaacaacatttaaga 17105  T
Q  125 atatcaagtacacatttagaaaaaatacaaatcattcacacataatcat 173  Q
    |||||||||| ||||||||  |||||||||||||| ||||||| |||||    
T  17106 atatcaagtagacatttag-taaaatacaaatcatccacacatcatcat 17153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 106524 - 106697
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcat-caacaacatttaagtat 126  Q
    ||||||||||||||||||||||  ||  ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||  || || ||||||| ||    
T  106524 aatattcacatttaaatataaaatttcatttaataaaaatcaa-taggcatcaatcaacatcttataataacatataagcataaaaaaatatttaagaat 106622  T
Q  127 atcaagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaata 209  Q
    |||||||| |||||        |  || |||||||||||||||||||||||||||||  |||| ||||||||||||| |||||    
T  106623 atcaagtagacatt--------agtcagatcattcacacataatcatatagaagcacaacattgaatatcacatcttaaaata 106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 108891 - 108958
Alignment:
Q  28 aatattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataat 96  Q
    ||||||||||||||||||||||  ||  ||||||||||||| ||||||||| ||||||||||| |||||    
T  108891 aatattcacatttaaatataaaatttcatttaataaaaatc-aataggcatcaatcaacatcttataat 108958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 67252 - 67073
Alignment:
Q  29 atattcacatttaaatataaaccttggtttaataaaaatcaaataggcattaatcaacatctaataataacatataagcatcaacaacatttaagtatat 128  Q
    |||||||||||||||||| ||| ||  ||||||||||||||| ||||||  ||| ||| ||| |||||||||| ||| |||||||| ||||| ||  |||    
T  67252 atattcacatttaaatatgaacgtttatttaataaaaatcaa-taggcaccaattaacgtcttataataacatctaaacatcaacatcatttcagattat 67154  T
Q  129 caagtacacatttagaaaaaatacaaatcattcacacataatcatatagaagcacgtcattaaatatcacatctttaaatagt 211  Q
    |||||| ||||| || |||| |||| |||||||||| |||||||||||||||||| ||||| |||||||| | || |||||||    
T  67153 caagtagacatt-agtaaaa-tacagatcattcacatataatcatatagaagcacatcattgaatatcacgtattaaaatagt 67073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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