View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_62 (Length: 235)
Name: NF9532_low_62
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 38944135 - 38943933
Alignment:
| Q |
15 |
cacagaccaagtttaaccaaatcaatgctaatgtggacgctaagcaattaaaaacttaaatacacgactagacgccatgtgtgaagaagggaatttggat |
114 |
Q |
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| T |
38944135 |
cacagactaagtttaaccgaatcaatgttgatgtagacgctaagcaattaaaaacttaagtacacgactagacgccatgtgtgaagaagggaatttggat |
38944036 |
T |
|
| Q |
115 |
gagacagaaaattttggaacatagatagaatacgtgggcgtggccacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgtt |
214 |
Q |
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| T |
38944035 |
gagacggaaaattttggaacatagatagaatacgtgggcgtggccacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgtt |
38943936 |
T |
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| Q |
215 |
aat |
217 |
Q |
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||| |
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| T |
38943935 |
aat |
38943933 |
T |
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