View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_64 (Length: 231)
Name: NF9532_low_64
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 54424803 - 54424577
Alignment:
| Q |
1 |
atcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcctctatatctgaccacactcctcttctcctacagcttttaattctatac |
100 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54424803 |
atcttcctggcaaacactttatccaaactctgccctccagaccttggtggcctctatatctgaccacactcctcttctcctacagctt--aattctatac |
54424706 |
T |
|
| Q |
101 |
cgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaaacagaactcaatcaatttgtgaagagcaactgggcctattatcctcc |
200 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
54424705 |
cgtggaggcaaactcaccgtagttttcagtttaataattcttggctattaaaaacagaacccaatcaattggtgaagagcaactgggcctattatcctcc |
54424606 |
T |
|
| Q |
201 |
gtcaaatattctcaccaaactcagtcact |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
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| T |
54424605 |
gtcaaatattctcaccaaactcaatcact |
54424577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20120039 - 20120265
Alignment:
| Q |
1 |
atcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcctctatatctgaccacactcctcttctcctacagcttttaattctatac |
100 |
Q |
| |
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|||||| |||||| |||| | ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| || || |||||| || |||||| |
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| T |
20120039 |
atcttcttggcaatcactatacccaaacgcttccctccagaccttggtggcctctatatctgaccacacccctctgcttctgcagcttg--atcctatac |
20120136 |
T |
|
| Q |
101 |
cgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaaacagaactcaatcaatttgtgaagagcaactgggcctattatcctcc |
200 |
Q |
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| T |
20120137 |
cttggagacaaccttaccgcaactttcggtttgacaattcttggcttttagaaccggaactcaatcaattggtgaagagcaactgggcccattaccctcc |
20120236 |
T |
|
| Q |
201 |
gtcaaatattctcaccaaactcagtcact |
229 |
Q |
| |
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|| |||||| ||| |||||||| ||||| |
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| T |
20120237 |
atctaatattatcaacaaactcaatcact |
20120265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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