View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_65 (Length: 229)
Name: NF9532_low_65
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 40961255 - 40961080
Alignment:
| Q |
18 |
atagattgacatttaatttagcaaggataatgatctatggtgcgaattgtatcagacgaacaaataagcgaagtgtatatgttttccattatcaccaatg |
117 |
Q |
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| T |
40961255 |
atagattgacatttaatttagcaaggataatgatctatggtgcgaattgtatcagacgaacaaataagcgaagtgtatatgttttccattatcaccaatg |
40961156 |
T |
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| Q |
118 |
atatcagcatctcctcacgaattccattaaaaatggaaatttaaattcgaccatccaatataggctaagcaggtgt |
193 |
Q |
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| T |
40961155 |
atatcagcatctcctcacgaattccattaaaaatggaaatttaaattcgaccatccaatataggctaagcaggtgt |
40961080 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 46503272 - 46503376
Alignment:
| Q |
107 |
tatcaccaatgatatcagcatctcctcacgaattccattaaaaatggaaatttaaattcgaccatccaatataggctaagcaggtgttgtttcgatgatt |
206 |
Q |
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| T |
46503272 |
tatcacccatgatgtcaacatctctccatgaattccaccaaaaatggaaatttaagtttgaacatccaatatatgctatgtatgtgttgttttgttggtt |
46503371 |
T |
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| Q |
207 |
ttcgt |
211 |
Q |
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| T |
46503372 |
ttcgt |
46503376 |
T |
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