View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_67 (Length: 228)
Name: NF9532_low_67
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7894915 - 7894806
Alignment:
| Q |
1 |
actatatcttgtatagaaagtatagtgcgcccaccaagttgtatggtttca-catgtttcaaggtcttgtacgtcgaatagctcgtacatgcccattcat |
99 |
Q |
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| T |
7894915 |
actatatcttgta-agaaagtatagtgcgcccaccaagttgtatggtttgaacatgtttcaaggtcttgtacgtctaataactcttacatgcccaatcat |
7894817 |
T |
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| Q |
100 |
tgatttattta |
110 |
Q |
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| T |
7894816 |
tgatttattta |
7894806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 7894756 - 7894697
Alignment:
| Q |
160 |
gactcttaaacgctactaagaacaatataagattggttgttatcaatatatgagtataat |
219 |
Q |
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| T |
7894756 |
gactcttaaacgctactaagaacaatataagattggttgttatcaatatatgagtataat |
7894697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 7905647 - 7905588
Alignment:
| Q |
51 |
acatgtttcaaggtcttgtacgtcgaatagctcgtacatgcccattcattgatttattta |
110 |
Q |
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| T |
7905647 |
acatgtttcaaggtcgtgtacacctaatagctcttacatgctcatccattgatttattta |
7905588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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