View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_68 (Length: 228)
Name: NF9532_low_68
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 33741406 - 33741600
Alignment:
| Q |
15 |
atactctactgcaa-atgatccaaaaattgtgccaccattttccaaaaacaacaacaccc-ttttcttttcctcttcataatcactaaatcgtgccac-a |
111 |
Q |
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| T |
33741406 |
atactcgactgcaacatgatccaaaaattgtgccaccattttccaaaaacaacaaaacccttttttttttcctcttcataatcactaaatcgtgccacga |
33741505 |
T |
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| Q |
112 |
attttttcaggaaaacaaatcaaattttaagtcaaaatccaacacaatcaataattgaactcaagtgattaatgagttatatcataggatagattgtt |
209 |
Q |
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| T |
33741506 |
tttttttcacgaaaacaaatcaaattttaagttaaaatccaacacaatc---aattgaactcaagagattaatgagttatatcagaggatagattgtt |
33741600 |
T |
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