View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_71 (Length: 224)
Name: NF9532_low_71
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 4393432 - 4393536
Alignment:
| Q |
18 |
attagggcacagttgcaagagtatggtcaagttggtgatgctaatgttttctattggttccaaaaccgcaaatcaagaagcaagcataagcttcgccatc |
117 |
Q |
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| T |
4393432 |
attagggcacagttgcaagagtatggtcaagttggtgatgctaatgttttctattggttccaaaaccgcaaatcaagaagcaagcataagcttcgccatc |
4393531 |
T |
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| Q |
118 |
tccaa |
122 |
Q |
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| T |
4393532 |
tccaa |
4393536 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 8284470 - 8284525
Alignment:
| Q |
33 |
caagagtatggtcaagttggtgatgctaatgttttctattggttccaaaaccgcaa |
88 |
Q |
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| T |
8284470 |
caagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaa |
8284525 |
T |
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