View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_72 (Length: 220)
Name: NF9532_low_72
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_72 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6326338 - 6326125
Alignment:
| Q |
1 |
atcaaaagagtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttca------tcagattcaacaaggtaaataacttcaa |
94 |
Q |
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| T |
6326338 |
atcaaaagagtttaacgaacaatggctgaattagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaa |
6326239 |
T |
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| Q |
95 |
ttatcaatcactactcaaacattaacttactctgtttccccnnnnnnnnagtagaaccctgtttttccattcaag-nnnnnnnnnagtcaattgaagttc |
193 |
Q |
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| T |
6326238 |
ttttcaatcactactcaaacattaacttactctgtttccccttttttttagtagaaccctgtttttccattcaagatttttttttagtcaattgaagttc |
6326139 |
T |
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| Q |
194 |
aatactagtataat |
207 |
Q |
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|||||||||||||| |
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| T |
6326138 |
aatactagtataat |
6326125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 6242476 - 6242582
Alignment:
| Q |
17 |
gaacaatggctgaattagaagctacaattccaaatgcaacttcaactt------catcagattcaacaaggtaaataacttcaattatcaatcactactc |
110 |
Q |
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| T |
6242476 |
gaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaacttcatcggattcaataaggtaaataacttcaattttcaatcactactc |
6242575 |
T |
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| Q |
111 |
aaacatt |
117 |
Q |
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| T |
6242576 |
aaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 6333802 - 6333717
Alignment:
| Q |
17 |
gaacaatggctgaattagaagctacaatt------ccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaatt |
96 |
Q |
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| T |
6333802 |
gaacaatggctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 686 - 810
Alignment:
| Q |
8 |
gagtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattatcaatcacta |
107 |
Q |
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|||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
686 |
gagtttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttcaatcacta |
785 |
T |
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| Q |
108 |
ctcaaacattaacttactctgtttc |
132 |
Q |
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| T |
786 |
ctcaaacattaacttactctgtttc |
810 |
T |
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