View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_77 (Length: 211)
Name: NF9532_low_77
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_77 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 45746632 - 45746816
Alignment:
| Q |
6 |
tggagaagcagagacaaaagcagcttaggcaaccttgttgtggagacattaaaaaccttaatgccacaactcagatcgcgagtgcagatttttaaaagaa |
105 |
Q |
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| T |
45746632 |
tggagaatcacaaacaaaagcggcttaggcaaccttgttgtggagacattaaaaaccttaatgccgcaactcagatcgcgactgcagatttttaaaagaa |
45746731 |
T |
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| Q |
106 |
aatggaacatgatatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaa |
190 |
Q |
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| T |
45746732 |
aatggaacatgatatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaa |
45746816 |
T |
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Target: scaffold0198 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 9960 - 10020
Alignment:
| Q |
130 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaa |
190 |
Q |
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| T |
9960 |
accttcatctgagttcgccgattctgaaaccagaacttgacttgtttgtttgccaagccaa |
10020 |
T |
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