View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9532_low_78 (Length: 205)
Name: NF9532_low_78
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 31700580 - 31700762
Alignment:
| Q |
5 |
gtggagtagcagagagaacaaaattgcaccttattggatttggagccaatcattgaaaaggttatgaaaatggaaagttctaacactgaaactagcagta |
104 |
Q |
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| T |
31700580 |
gtggagtatcaaggagagcaaaattgcaccttattggatttggagccaatcattgaaaaggttttgaaaatggaaagttctaacactgaaactagcagta |
31700679 |
T |
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| Q |
105 |
ttgttggactcagtttggatgacttcataaattttctgcttgttgatgatttcaatggtcccttaaaagatgaggtatgcact |
187 |
Q |
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| T |
31700680 |
ttgttggactcagtttggatgacttcataaattttctgcttgttgatgatttcaatggtcccttaaaagatgaggtatgcact |
31700762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 31648708 - 31648887
Alignment:
| Q |
5 |
gtggagtagcagagagaacaaaattgcaccttattggatttggagccaatcattgaaaaggttatgaaaatggaaagttctaacactgaaactagcagta |
104 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31648708 |
gtggagtatcaaggagaacaaaattgcaccttattggatttggagccaatcattgaaaaggttttgaaaatggaaagttctaacactgaaactagcagta |
31648807 |
T |
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| Q |
105 |
ttgttggactcagtttggatgacttcataaattttctgcttgttgatgatttcaatggtcccttaaaagatgaggtatgc |
184 |
Q |
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| T |
31648808 |
ttgcaggactcaatttggatgacttcttagattttctgcttctagatgatttcaatggtcctttaaaagatgaggtatgc |
31648887 |
T |
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