View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9532_low_8 (Length: 482)
Name: NF9532_low_8
Description: NF9532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9532_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 8017996 - 8017540
Alignment:
| Q |
11 |
cagagacaatggagtgacatccaaaagcaacaaatcttgaaccttttcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8017996 |
cagagacaatggagtgacatccaaaagcagcaaatcttgaaccttttcattgccttcaccactcaaaattgctgcttgtacagcggcaccataagcaaca |
8017897 |
T |
|
| Q |
111 |
gcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||| |
|
|
| T |
8017896 |
gcctcgtctgggttgatactcttgcaaagctctttaccattgaagaaatcttgcaacagttgctgaactttgggaattctagttgaaccgccaacaagaa |
8017797 |
T |
|
| Q |
211 |
caacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8017796 |
caacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacactttctgaacagatccatgttaagttcctcaaa |
8017697 |
T |
|
| Q |
311 |
tctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctc |
410 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8017696 |
tcttgcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctc |
8017597 |
T |
|
| Q |
411 |
tcacatgcggttctcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
||||| || || ||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8017596 |
tcacaagctgtcctcaacctcctaagtgctctagggtttccactaatatccttcttg |
8017540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 8102254 - 8102708
Alignment:
| Q |
13 |
gagacaatggagtgacatccaaaagcaacaaatcttgaaccttttcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaacagc |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||| ||||||||||||||||||||||| |
|
|
| T |
8102254 |
gagacaatggggtgacatccaaaagcaacaaatcttgaaccttctcatttccttcaccactcaagatagcagcttgaacagcggcaccataagcaacagc |
8102353 |
T |
|
| Q |
113 |
ctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaaca |
212 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8102354 |
ctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctgaactttgggaatcctagttgaaccaccaacaagaaca |
8102453 |
T |
|
| Q |
213 |
acatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatc |
312 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102454 |
acatcatgaactgtgctcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatc |
8102553 |
T |
|
| Q |
313 |
tggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8102554 |
tggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctc |
8102653 |
T |
|
| Q |
413 |
acatgcggttctcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
8102654 |
acatgcggttctcaatctcctaagtgccctagggtttccgctaatatccttcttg |
8102708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 467
Target Start/End: Original strand, 39985244 - 39985687
Alignment:
| Q |
24 |
gtgacatccaaaagcaacaaatcttgaaccttttcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggt |
123 |
Q |
| |
|
|||||||||||||| | | ||| |||||||| |||||||| ||||| ||||| || || || || ||||| |||||||| ||||||||||| || || | |
|
|
| T |
39985244 |
gtgacatccaaaaggagaagatcctgaaccttctcattgccctcaccactcaagatagcagcctgaacagcagcaccatatgcaacagcctcatcaggat |
39985343 |
T |
|
| Q |
124 |
tgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcatgaac |
223 |
Q |
| |
|
| || |||||||| |||||||| || || |||||||||||||| ||||| ||||| || || || || || ||||| || ||||| |||||||| || || |
|
|
| T |
39985344 |
ttatgctcttgcatagctcctttccgttaaagaaatcttgcaaaagttgttgaacctttggaattctggtagaacctcctacaaggacaacatcgtggac |
39985443 |
T |
|
| Q |
224 |
agagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtg |
323 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || || ||||||||||| || ||||||||||| ||||| || |
|
|
| T |
39985444 |
acttttcttgtccatcttggcatctctcaaacatttctcaactggctccatacattttctaaagagatccatgttgagctcctcaaatcttgcacgagta |
39985543 |
T |
|
| Q |
324 |
attgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctcacatgcggttc |
423 |
Q |
| |
|
|| | || ||| ||||||| || ||||| | ||||||||| |||||||| || || ||||| || |||||||||||||||||||| ||||| || || | |
|
|
| T |
39985544 |
atgggggagtagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcc |
39985643 |
T |
|
| Q |
424 |
tcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
|||| |||||||| || || ||||| ||||| || ||||||||| |
|
|
| T |
39985644 |
tcaacctcctaagagctctggggttgccactgatgtccttcttg |
39985687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 17259905 - 17260094
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| |||||||| | |||||||| ||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
17259905 |
acagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcc |
17260004 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacact |
279 |
Q |
| |
|
||| || ||||||||||| |||||||||| || | ||||||| |||||| |||| || | ||||||||||||| |||||| |||| |
|
|
| T |
17260005 |
tagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaacaatctccatgcact |
17260094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 17267603 - 17267792
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||| ||||| | ||||| || |||||||| | ||||| |||||||| |||||||| |||| |
|
|
| T |
17267603 |
acagcagcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaagttctgcaatagttgctgcactttcggaatcc |
17267702 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacact |
279 |
Q |
| |
|
||| || ||||||||||| |||||||||| ||| | ||||||| ||||||||||| || | ||||||||||||| |||||| |||| |
|
|
| T |
17267703 |
tagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcact |
17267792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 8590296 - 8590458
Alignment:
| Q |
84 |
gcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcg |
183 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||| ||||| || ||| |||| ||||| || | || || |||||||| || ||||| ||||| | |
|
|
| T |
8590296 |
gcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgg |
8590395 |
T |
|
| Q |
184 |
ggatcctagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcat |
246 |
Q |
| |
|
| ||||||| |||||||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8590396 |
gaatcctagaagaaccaccaacaagtacaacatcatctacaatgttcttgtccatcttagcat |
8590458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 7878237 - 7878080
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| ||||||||||||||||| || || |||||||| || |||||| ||||| || || || || || ||||| || ||||| ||||| | |||| |
|
|
| T |
7878237 |
acagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaatcc |
7878138 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatc |
247 |
Q |
| |
|
||| ||| ||||||||||| |||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
7878137 |
tagatgatccaccaacaagtacaacatcatctacattgttcttgtccatcatagcatc |
7878080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 8609581 - 8609710
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||||||| ||| | || | ||||| |||||||| || ||||||| || |||| |||||||| |||| |
|
|
| T |
8609581 |
acagcagcaccataagcaaccgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgcagtagctgcttcactttcggaatcc |
8609680 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |
|
|
| T |
8609681 |
tagaagaacctccaacaagaacaacatcat |
8609710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 8667065 - 8667122
Alignment:
| Q |
72 |
ctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatac |
129 |
Q |
| |
|
|||||||| || || || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8667065 |
ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcgtctgggttgatac |
8667122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 10494896 - 10494749
Alignment:
| Q |
72 |
ctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagtt |
171 |
Q |
| |
|
|||||||| || || || ||||| |||||||||||||||||||| ||||||||||||| | || | | ||||| || ||||| || ||| |||| || | |
|
|
| T |
10494896 |
ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagat |
10494797 |
T |
|
| Q |
172 |
gctgaactttcgggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
||| ||||| || ||||||| || ||||| |||||||||| ||||| |
|
|
| T |
10494796 |
cctgcactttgggaatcctagacgagccacccacaagaacaatatcat |
10494749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 29578176 - 29578053
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || ||| |||| | ||| |||| ||||| || |||||||| |||| | | ||||| || || | |
|
|
| T |
29578176 |
acagctgcaccataagcaacagcctcgtcagggtttatgctcatgcacaaatccctacccttgaaaaagtcttgcaatagtttccgcactttgggaattc |
29578077 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaa |
213 |
Q |
| |
|
||| |||||| |||||||| |||| |
|
|
| T |
29578076 |
tagatgaacctccaacaaggacaa |
29578053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 8659033 - 8659071
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttg |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8659033 |
gcaccataagcaacagcctcatctgggttgatactcttg |
8659071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 7877919 - 7877874
Alignment:
| Q |
408 |
ctctcacatgcggttctcaatctcctaagggccctagggtttccac |
453 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7877919 |
ctctcacatgcagttctcaacctcctaagggccctcgggtttccac |
7877874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 13333890 - 13333833
Alignment:
| Q |
72 |
ctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatac |
129 |
Q |
| |
|
|||||||| || || || ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13333890 |
ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac |
13333833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 1301110 - 1301168
Alignment:
| Q |
75 |
aaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttg |
134 |
Q |
| |
|
||||| || ||||| | ||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1301110 |
aaaatagcagcttgaatagctgcaccataagcaacagcctcgtc-gggttgatactcttg |
1301168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 8575996 - 8576147
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| || | ||||| || ||||| | || || || || || ||||| || ||||||| | |
|
|
| T |
8575996 |
gcaccataagcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaag |
8576095 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatc |
247 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8576096 |
aaccaccaacaaggacaacatcatctacactattcttgtccatcttagcatc |
8576147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 6789176 - 6789330
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||||||| ||| |||| | ||||| || |||| | |||||||| ||||| || ||||| || || | |
|
|
| T |
6789176 |
acagctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattc |
6789275 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagc |
244 |
Q |
| |
|
||| || ||||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
6789276 |
tagaagacccaccaacaaggacaacatcatttacaatactcttgtccatcttagc |
6789330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 8646649 - 8646698
Alignment:
| Q |
198 |
ccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatc |
247 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||| ||||| |
|
|
| T |
8646649 |
ccaccaacaagaacaacatcatggatagaactcttgtccatcttggcatc |
8646698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 8581370 - 8581410
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgca |
136 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
8581370 |
gcaccataagcaacagcctcatcagggttgatgctcttgca |
8581410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 29582345 - 29582269
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaa |
166 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| ||| |||| | ||||| || ||||| || |||||||| |
|
|
| T |
29582345 |
acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaa |
29582269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 57 - 466
Target Start/End: Complemental strand, 23588270 - 23587861
Alignment:
| Q |
57 |
tcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaaga |
156 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| || || || ||||| |||||||| || || |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
23588270 |
tcattgccctcaccactcaaaatagcagcttggacggctgccccatatgcaacagcttcatcggggttgatgctcttacaaagctcctttccattgaaga |
23588171 |
T |
|
| Q |
157 |
aatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaaca |
256 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||||| || ||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||| |
|
|
| T |
23588170 |
aatcttgcaaaagttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatggacactgttcttatccatcttagcatccctcaaaca |
23588071 |
T |
|
| Q |
257 |
cttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || || ||||| | || || ||||| || |||||||| |||| |||||||||||| |
|
|
| T |
23588070 |
cttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcccgagtgatggtagtgtaaaagtcaataccctcaaacaat |
23587971 |
T |
|
| Q |
357 |
gaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggtttccactaa |
456 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| || || || || ||||| |||||||| || || ||||||||||| ||||| ||||| || |||||||||| |
|
|
| T |
23587970 |
gaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaa |
23587871 |
T |
|
| Q |
457 |
tatccttctt |
466 |
Q |
| |
|
|||||||||| |
|
|
| T |
23587870 |
tatccttctt |
23587861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 57 - 466
Target Start/End: Complemental strand, 23597122 - 23596713
Alignment:
| Q |
57 |
tcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaaga |
156 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| || || || ||||||||||||||||| || |||||||| ||||| ||||| ||||| |||||||||| |
|
|
| T |
23597122 |
tcattgccttcgccgctcaaaatagcagcttggactgcagcgccataagcaacagcctcatcagggttgatgctcttacaaagttccttcccattgaaga |
23597023 |
T |
|
| Q |
157 |
aatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaaca |
256 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||||| || || ||||||||||||||||||| |||| |||||| |||||||||||||| |||||||| |
|
|
| T |
23597022 |
aatcttgcaaaagttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaacactgttcttatccatcttagcatccctcaaaca |
23596923 |
T |
|
| Q |
257 |
cttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| || || ||||| | || || || || || |||||||| |||| ||||||||||||| |
|
|
| T |
23596922 |
cttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccctcaaacaaa |
23596823 |
T |
|
| Q |
357 |
gaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggtttccactaa |
456 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| || || ||||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||||||| |
|
|
| T |
23596822 |
gaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaaccttctaagagcccttggatttccactaa |
23596723 |
T |
|
| Q |
457 |
tatccttctt |
466 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23596722 |
tatctttctt |
23596713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 44 - 466
Target Start/End: Original strand, 54396041 - 54396463
Alignment:
| Q |
44 |
atcttgaaccttttcattgccttcaccgctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctcc |
143 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
54396041 |
atcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctct |
54396140 |
T |
|
| Q |
144 |
ttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttag |
243 |
Q |
| |
|
|| |||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||||||||||| ||||||||| |||| || ||||||| |
|
|
| T |
54396141 |
ttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttag |
54396240 |
T |
|
| Q |
244 |
catctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaac |
343 |
Q |
| |
|
|||| || | ||||||||||||||| |||||||| ||||| |||| |||||| || | ||| |||||||| || | || || || | || ||||||| |
|
|
| T |
54396241 |
catcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaat |
54396340 |
T |
|
| Q |
344 |
accctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagggcccta |
443 |
Q |
| |
|
|| ||||||||||||||||| || || || || || |||||||| || || |||||||| ||||||||||| || ||||| |||||||| | || || |
|
|
| T |
54396341 |
tccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctctt |
54396440 |
T |
|
| Q |
444 |
gggtttccactaatatccttctt |
466 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
54396441 |
gcattaccactaatatccttctt |
54396463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 9336413 - 9336266
Alignment:
| Q |
72 |
ctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagtt |
171 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||| | || | | ||||| || ||||| || ||| |||| |||| |
|
|
| T |
9336413 |
ctcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatacccatgaataattccttccccttgaaaaattctagcaatagtt |
9336314 |
T |
|
| Q |
172 |
gctgaactttcgggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
|| |||||||| ||||||| || ||||| |||||||||| ||||| |
|
|
| T |
9336313 |
cttgcactttcggaatcctagacgagccacccacaagaacaatatcat |
9336266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 35132129 - 35132249
Alignment:
| Q |
99 |
ccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaac |
198 |
Q |
| |
|
|||||||| |||||||| || ||||| || |||||||| | |||||| || ||||| || | |||||| || ||||| ||||| || ||||||| || | |
|
|
| T |
35132129 |
ccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagacc |
35132228 |
T |
|
| Q |
199 |
caccaacaagaacaacatcat |
219 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
35132229 |
ctccaacaagaacaacatcat |
35132249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 30774930 - 30775045
Alignment:
| Q |
104 |
agcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaaccacca |
203 |
Q |
| |
|
|||||| ||||| || || ||||| |||||||| | ||||| ||||||||||||| |||| |||| ||| ||||| || ||||||| |||||||| |
|
|
| T |
30774930 |
agcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccg |
30775029 |
T |
|
| Q |
204 |
acaagaacaacatcat |
219 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
30775030 |
acaagaacaatatcat |
30775045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 9336194 - 9336158
Alignment:
| Q |
291 |
tccatgttaagttcctcaaatctggcacgggtgattg |
327 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
9336194 |
tccatgttaagttcctcaaatttggcacgagtgattg |
9336158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 96 - 467
Target Start/End: Complemental strand, 17717185 - 17716814
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||| ||||||||||| || || || || |||||||| |||||||| | || |||||||| ||||| ||||| ||||| || || || || || | |
|
|
| T |
17717185 |
gcaccatatgcaacagcctcatcgggattaatgctcttgcatagctcctttctgttaaagaaatcctgcaatagttgttgaacctttggaattctggtag |
17717086 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| |||| |||| ||||| |||||||| |||||||| |||||||||| | |||||| ||||||| |
|
|
| T |
17717085 |
aacctcctacaaggacaacatcatggacacttcctttgtacatcccagcatggctcaaacatttctcaacttgctccatacattccctgaagagatccaa |
17716986 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagaga |
395 |
Q |
| |
|
||| || || |||||||||||||| || || | ||| || ||||||| |||||||| | | ||||||| |||||||| || || ||||| ||||| ||| |
|
|
| T |
17716985 |
gttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggcagtagatgataga |
17716886 |
T |
|
| Q |
396 |
gttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
| ||||||||| |||||||| || || ||||| ||| |||| || || ||||| |||||||| ||||||||| |
|
|
| T |
17716885 |
gctctcttcgccctctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttg |
17716814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 467
Target Start/End: Complemental strand, 17648539 - 17648168
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||| ||||||||||| || || || || || ||||| |||||||| || | |||||||| ||||| ||||| ||||| || || || || || | |
|
|
| T |
17648539 |
gcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttgtag |
17648440 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| |||| |||||| ||| || ||||||||| |||||||||||||||| ||||||| |||||||||| ||||| || |||||||| |
|
|
| T |
17648439 |
aaccgcctacaaggacaatatcatggacactttttttgtccatcctagcatctctcaaacatatctcaacttgctccatacatttcctaaagagatccat |
17648340 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagaga |
395 |
Q |
| |
|
||| || ||||||||||| ||||| || || | || | | ||||||| ||||| || | | ||||||| |||||||| ||||| ||| |||| ||| |
|
|
| T |
17648339 |
gttgagctcctcaaatcttgcacgagtaatggaggagcagaaatcaattccctcgaatagacaatcaatttcaatggtggtttggagagtaaatgataga |
17648240 |
T |
|
| Q |
396 |
gttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
|||||||| || ||||||| || || ||||| ||| |||| || || ||||| |||||||| ||||||||| |
|
|
| T |
17648239 |
gttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttg |
17648168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 96 - 467
Target Start/End: Complemental strand, 17622443 - 17622072
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||| | |||||||||||||| || || || || ||||| |||||||| || || |||||||| ||||| | ||| ||||| || || || || || | |
|
|
| T |
17622443 |
gcaccacacgcaacagcctcgtcgggattaatgctattgcatagctcctttccgttaaagaaatcctgcaataattgttgaacctttggaattctggtag |
17622344 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| | ||||||||| |||||| ||||||||| |||||||| |||||||||| ||||| || |||||||| |
|
|
| T |
17622343 |
aacctcctacaaggacaacatcatggacacttgttttgtccatcctagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatccat |
17622244 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagaga |
395 |
Q |
| |
|
||| || | |||||| ||||||| || || | || | | ||||||| ||||| || | | ||||||| |||||||| ||||| |||| |||| ||| |
|
|
| T |
17622243 |
gttgagcttttcaaatgtggcacgagtaatgggggagcagaaatcaattccctcgaatagacaatcaatttcaatggtggtttggacagtaaatgataga |
17622144 |
T |
|
| Q |
396 |
gttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggtttccactaatatccttcttg |
467 |
Q |
| |
|
|||||||| || ||||||| || || ||||| ||| |||| || || ||||| ||||| || ||||||||| |
|
|
| T |
17622143 |
gttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgatgtccttcttg |
17622072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 415
Target Start/End: Complemental strand, 17667181 - 17666862
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||| |||||||||||| || || || || ||||| |||||||| || || |||||||| ||||| | ||| ||||| || || || || || | |
|
|
| T |
17667181 |
gcaccatacacaacagcctcgttgggattaatgctattgcatagctcctttccgttaaagaaatcctgcaataattgttgaacctttggaattctggtag |
17667082 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| | |||||||||||||||| ||||||||| |||||||| |||||||||| ||||| || |||||||| |
|
|
| T |
17667081 |
aacctcctacaaggacaacatcatggacacttcttttgtccatcttagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatccat |
17666982 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagaga |
395 |
Q |
| |
|
||| || || |||||| ||||||| || || || | | ||||||| ||||| || | | | ||||| |||||||| || || ||||| ||||| ||| |
|
|
| T |
17666981 |
gttgagctcttcaaatgtggcacgagtaatgaaggagcagaaatcaattccctcgaatagacattcaatttcaatggtggtctgagcagtagatgataga |
17666882 |
T |
|
| Q |
396 |
gttctcttcgctctctcaca |
415 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
17666881 |
gctctcttcgccctctcaca |
17666862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 319
Target Start/End: Complemental strand, 17706210 - 17705988
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||| ||||||||||| || || || || || ||||| |||||||| || | |||||||| |||| |||| ||||| || || || || || | |
|
|
| T |
17706210 |
gcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcat-agtttttgaacctttggaattctggtag |
17706112 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| || |||||||||||||||||||||||||| |||||||| |||||||||| ||||| || |||||||| |
|
|
| T |
17706111 |
aacctcctacaaggacaacatcatggacactttttttgtccatcttagcatctctcaaacatttctcaacttgctccatacatttcctaaagagatccat |
17706012 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacg |
319 |
Q |
| |
|
||| || || |||||||||||||| |
|
|
| T |
17706011 |
gttgagctcttcaaatctggcacg |
17705988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 467
Target Start/End: Complemental strand, 17718297 - 17718078
Alignment:
| Q |
248 |
tctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccc |
347 |
Q |
| |
|
||||||||| |||||||| |||||||||| | |||||| ||||||| ||| || || |||||||||||||| || || | ||| || ||||||| ||| |
|
|
| T |
17718297 |
tctcaaacatttctcaacttgctccatacattccctgaagagatccaagttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccc |
17718198 |
T |
|
| Q |
348 |
tcaaacaaagaatcaatctcaatggtagtttgtgcagttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagggccctagggt |
447 |
Q |
| |
|
||||| | | ||||||| |||||||| || || | ||| ||||| |||| ||||||||| |||||||| || || ||||| || |||| || || |||| |
|
|
| T |
17718197 |
tcaaatagacaatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaacttcataagagctcttgggt |
17718098 |
T |
|
| Q |
448 |
ttccactaatatccttcttg |
467 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
17718097 |
tgccactaatgtccttcttg |
17718078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 16658039 - 16657892
Alignment:
| Q |
72 |
ctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagtt |
171 |
Q |
| |
|
|||||||| || ||||| ||||| ||||| ||||||||||| || || ||||||||||| ||||| | ||||| || ||||| || |||||||| || | |
|
|
| T |
16658039 |
ctcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagat |
16657940 |
T |
|
| Q |
172 |
gctgaactttcgggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
||| ||||| || ||||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
16657939 |
cctgcactttgggaatcctagatgagccacccacaagaacaacgtcat |
16657892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 16662502 - 16662429
Alignment:
| Q |
84 |
gcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaa |
157 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| || |||||||| |||||||| | |||||| ||||||||||| |
|
|
| T |
16662502 |
gcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaa |
16662429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 12234364 - 12234455
Alignment:
| Q |
100 |
cataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctag |
192 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| || ||||||| |
|
|
| T |
12234364 |
cataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaatcctag |
12234455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 319
Target Start/End: Complemental strand, 17704553 - 17704330
Alignment:
| Q |
96 |
gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttg |
195 |
Q |
| |
|
|||||||| |||||| ||||||| || || || || | ||| |||| ||| | || |||||||| ||||| ||||| ||||| || || || || || | |
|
|
| T |
17704553 |
gcaccatatgcaacaacctcgtcgggattaatgctatcgcatagcttctttctgttaaagaaatcctgcaatagttgttgaacctttggaattctggtag |
17704454 |
T |
|
| Q |
196 |
aaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccat |
295 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| | ||||||||| ||||| ||||||| ||||| |||| ||||||||| ||| | || |||||||| |
|
|
| T |
17704453 |
aacctcctacaaggacaacatcatggacacttgttttgtccatcctagcaaatctcaaaagtttctcgacagtctccatacatttcataaagagatccat |
17704354 |
T |
|
| Q |
296 |
gttaagttcctcaaatctggcacg |
319 |
Q |
| |
|
||| || || |||||||||||||| |
|
|
| T |
17704353 |
gttgagctcttcaaatctggcacg |
17704330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 11999066 - 11999200
Alignment:
| Q |
84 |
gcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcg |
183 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| || ||||| || |||||||| | |||||| || ||||| || || || || || || || ||||| | |
|
|
| T |
11999066 |
gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggacttt-g |
11999164 |
T |
|
| Q |
184 |
ggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||| |
|
|
| T |
11999165 |
ggatcctagaagatccaccaacaagtacaacatcat |
11999200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 12245916 - 12245781
Alignment:
| Q |
84 |
gcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcg |
183 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| ||||| || |||||||| | ||||| || ||||| || || || || || || || ||||| | |
|
|
| T |
12245916 |
gcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgg |
12245817 |
T |
|
| Q |
184 |
ggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
| ||||||| || ||||||||||| |||| ||||| |
|
|
| T |
12245816 |
gaatcctagaagatccaccaacaagtacaaaatcat |
12245781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 4679081 - 4678932
Alignment:
| Q |
70 |
cgctcaaaatcgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacag |
169 |
Q |
| |
|
|||||||||| || ||||| | ||| |||||||||||||||||||| |||||||||||||||||||| | ||||| | || || || |||||||| || |
|
|
| T |
4679081 |
cgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatag |
4678982 |
T |
|
| Q |
170 |
ttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcat |
219 |
Q |
| |
|
| ||| ||||| || ||||| | ||||||||| |||||||||||||||| |
|
|
| T |
4678981 |
atcctgcactttgggaatcctcgatgaaccacccacaagaacaacatcat |
4678932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 34467282 - 34467135
Alignment:
| Q |
100 |
cataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcctagttgaacc |
199 |
Q |
| |
|
||||||| |||||||| || |||||||| || ||||| || |||||||||||||| || || |||| || ||||| ||||| || ||||||| || || |
|
|
| T |
34467282 |
cataagcgacagcctcatcagggttgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcc |
34467183 |
T |
|
| Q |
200 |
accaacaagaacaacatcatgaacagagttcttgtccatcttagcatc |
247 |
Q |
| |
|
|| ||||| ||| ||||||| ||| || |||||||||||||||| |
|
|
| T |
34467182 |
cccgacaaggacagcatcatgcacactactcgtgtccatcttagcatc |
34467135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 15594698 - 15594815
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| ||| |||| | ||||| || | ||| ||||| | ||| ||||| || ||||| || |||| |
|
|
| T |
15594698 |
acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcc |
15594797 |
T |
|
| Q |
190 |
tagttgaaccaccaacaa |
207 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
15594798 |
tagaagacccaccaacaa |
15594815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 90 - 280
Target Start/End: Original strand, 12528168 - 12528358
Alignment:
| Q |
90 |
acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctccttaccattgaagaaatcttgcaacagttgctgaactttcgggatcc |
189 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||| | | |||||| || ||||| || || ||||| || |||| ||||| || |||| |
|
|
| T |
12528168 |
acagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaatcc |
12528267 |
T |
|
| Q |
190 |
tagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacactt |
280 |
Q |
| |
|
||| || ||||||||||| |||| ||||| ||| ||||||||||||||||||| ||||||| | ||||| | |||||||||||| |
|
|
| T |
12528268 |
tagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacactt |
12528358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 43744552 - 43744637
Alignment:
| Q |
162 |
tgcaacagttgctgaactttcgggatcctagttgaaccaccaacaagaacaacatcatgaacagagttcttgtccatcttagcatc |
247 |
Q |
| |
|
||||| ||||| || ||||| || ||||||| || ||||||||||||||||||||||| | || | ||||||||||||| ||||| |
|
|
| T |
43744552 |
tgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatgtatagcgctcttgtccatcttggcatc |
43744637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University