View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_high_12 (Length: 329)
Name: NF9533A_high_12
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_high_12 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 40478 - 40166
Alignment:
| Q |
17 |
acatcacaaacaaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacatta |
116 |
Q |
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| T |
40478 |
acatcacaaacaaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacatta |
40379 |
T |
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| Q |
117 |
taaacagctctaaaaggaacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtactacggacat |
216 |
Q |
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| T |
40378 |
taaacagctctaaaaggaacttcgaataaacgaaaattagctttgatgagattcgataacaagggtttttcaaagttctctatcgctgtactacggacat |
40279 |
T |
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| Q |
217 |
tcagtttaatatataaagttttcaaatcctccaatttgggactgccggagagaagcttcatgtaatcatcacaattttgaaaacaaacaaaacacagatc |
316 |
Q |
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| T |
40278 |
tcagtttaatatataaagttttcaaatcctccaatttgggactgccggagagaagcttcatgtaatcatcactattttgaaaacaaacaaaacacagatc |
40179 |
T |
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| Q |
317 |
aagggttttaagc |
329 |
Q |
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| T |
40178 |
aagggttttaagc |
40166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 33860 - 33539
Alignment:
| Q |
17 |
acatcacaaacaaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaa-ggatgcttc--------tacctgaagcacattcagaaac |
107 |
Q |
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| T |
33860 |
acatcacaaacaaacaaaaatcaaacaacatacgtaatagtgatgataccaaaaaaaaaatggatgcttcatatataatacctcaagtacatttagaaac |
33761 |
T |
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| Q |
108 |
tgcacattataaacagctctaaaaggaacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtac |
207 |
Q |
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| T |
33760 |
tgcacattataaactgctctaaaaggaacttcgaataaacgaaaattagctttgatgagattggataacaagggtttttcaaagttctctatcactgtaa |
33661 |
T |
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| Q |
208 |
tacggacattcagtttaatatataaagttttcaaatcctccaatttgggactgccggagagaagcttcatgtaatcatcacaattttgaaaacaaacaaa |
307 |
Q |
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|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| | |
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| T |
33660 |
caccgatattcagttggatatataaagttttcaaatcctccaatttgggactgccggagagaagcttcatgaaatcatccctatttcgaaaacaaacaca |
33561 |
T |
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| Q |
308 |
acacagatcaagggttttaagc |
329 |
Q |
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||||||||| || ||||||||| |
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| T |
33560 |
acacagatcgagcgttttaagc |
33539 |
T |
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