View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_high_24 (Length: 253)
Name: NF9533A_high_24
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 35449784 - 35450035
Alignment:
| Q |
2 |
ctaatgaaccttaaagatctaatcaacaacatcattagagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatc |
101 |
Q |
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| T |
35449784 |
ctaatgaaccttaaagatctaatcaacaacatcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatc |
35449883 |
T |
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| Q |
102 |
aacaacaaaatgctccactttccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatc |
201 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35449884 |
aacaacaaaatgatccactttccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttc |
35449983 |
T |
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| Q |
202 |
agattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgatt |
253 |
Q |
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| T |
35449984 |
agattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgatt |
35450035 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
38 |
agagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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