View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_high_25 (Length: 252)
Name: NF9533A_high_25
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 19190539 - 19190310
Alignment:
| Q |
23 |
cactagaacggttttcttcgccatatccaccaatactcgtacgccctccatcaccatatccacccccagaacgcccatatccactctcataacggtcatt |
122 |
Q |
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| T |
19190539 |
cactagaacggttttcttcgccatatccaccaatactcgaacgccctccatcaccatatccaccaccagaacgcccatatccactctcataacggtcatt |
19190440 |
T |
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| Q |
123 |
agcgccataaccaccaccagaacggtcatcggaaccataaccaccaccaaaacgtccacctccatacccgctctcgttattattcccataaccaccaccg |
222 |
Q |
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| T |
19190439 |
agcgccataaccaccaccagaacggtcatcggaaccataaccaccaccaaaacgtccacctccatacccgctctcgttattattcccataaccaccaccg |
19190340 |
T |
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| Q |
223 |
gaacgaccattagaaccataaccaccacca |
252 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19190339 |
gaacgaccattagaaccataaccaccacca |
19190310 |
T |
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