View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_high_3 (Length: 447)
Name: NF9533A_high_3
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 54913045 - 54912852
Alignment:
| Q |
23 |
aacacccttttgcaaggtttactgtattgtactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttagagctcatcttcg |
122 |
Q |
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| T |
54913045 |
aacacccttttgcaaggtttactatattgtactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttagagctcatcttcg |
54912946 |
T |
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| Q |
123 |
tgtcaatatcatgaggtttcttttcttaat-ccttatatacaattttgcatgcttttattaatacaacagtttttgtctgttaattaataatta |
215 |
Q |
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| T |
54912945 |
tgtcaatatcatgaggtttcttttcttaatcccttatatacaattttgcatgcttttattaatacaacagtttttgtctgttaattaataatta |
54912852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 11464742 - 11464684
Alignment:
| Q |
52 |
tactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttag |
110 |
Q |
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| T |
11464742 |
tactctcatggcaacgctgctgatctgggtcagatgtatgagcttttcattgagcttag |
11464684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 7338093 - 7338061
Alignment:
| Q |
55 |
tctcatggtaatgctgctgatttgggtcagatg |
87 |
Q |
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| T |
7338093 |
tctcatggaaatgctgctgatttgggtcagatg |
7338061 |
T |
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