View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_100 (Length: 287)
Name: NF9533A_low_100
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 31696245 - 31695984
Alignment:
| Q |
2 |
tgatggattaaatctgttaagagaaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatacaggcacagaagatgaacaca |
101 |
Q |
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| T |
31696245 |
tgatggattaaatctgttaagaggaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatacaggcacagaagatgaacaca |
31696146 |
T |
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| Q |
102 |
tcccaatcgatctcttctgttccaaagaagacgcccaaattccacgtggcaccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaaca |
201 |
Q |
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| T |
31696145 |
tcccaatcgatctcttctgttccaaagaagacgcccgagttccacgtggcaccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaaca |
31696046 |
T |
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| Q |
202 |
tcaaccatccaatcccaaactcttgcttgattccaatgataatcctctattctccatccacc |
263 |
Q |
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| T |
31696045 |
tcaaccacccaatcccaaactcttgcttgattccaatgataatcctctattctcaatccacc |
31695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 219
Target Start/End: Complemental strand, 31690026 - 31689861
Alignment:
| Q |
51 |
aaatggaaacttcagaagattgggaatatacaggcacagaagatgaacacatcccaatcgatctcttctgttccaaagaagacgcccaaattccacgtgg |
150 |
Q |
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| T |
31690026 |
aaatggaaacttcaga---tttggagtacacaggcaccgaagatcaacacatcccaatcgatcttttcggttccaaaaaacacgccggagttccacgtgg |
31689930 |
T |
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| Q |
151 |
caccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaacatcaaccatccaatcccaa |
219 |
Q |
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| T |
31689929 |
catcctagcgtttacagatgcatcggggaacatagtcttcaaggtgcaccgtcaaccacccgatcccaa |
31689861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 31689835 - 31689787
Alignment:
| Q |
218 |
aaactcttgcttgattccaatgataatcctctattctccatccaccgtc |
266 |
Q |
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| T |
31689835 |
aaactcttgcttgattccaatgataatcctctgttttccatccaccgtc |
31689787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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