View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_108 (Length: 281)
Name: NF9533A_low_108
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 6976695 - 6976588
Alignment:
| Q |
14 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
113 |
Q |
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| T |
6976695 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
6976596 |
T |
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| Q |
114 |
ccaaccta |
121 |
Q |
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|||||||| |
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| T |
6976595 |
ccaaccta |
6976588 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 6957183 - 6957129
Alignment:
| Q |
66 |
acctccttttcattgccataatattgagcacaatctatatgacgatatccaacct |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
6957183 |
acctccttttcattgccataaatttgagcacaatctatatgacgataaccaacct |
6957129 |
T |
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