View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_109 (Length: 278)
Name: NF9533A_low_109
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 24211095 - 24210822
Alignment:
| Q |
1 |
ttggatgagataaagaattggatgaaagagtgggaaccatggatggttatagttaagattttccaacaagttcacactctttgtttcaactatagaacat |
100 |
Q |
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| T |
24211095 |
ttggatgagataaagaattggatgaaagagtgggaaccatggatggttatagttaagattttccaacaagttcacactctttgtttcaactatagaacat |
24210996 |
T |
|
| Q |
101 |
gttttttggtttgtgaaacattaacatagtaatgtttatctttggctttggaccgttaatctagtttggtgtttgtgggaattatcttgaatagaagagg |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24210995 |
gttttttggtttgtgaaacataaacatagtaatgtttatctttggctttggaccgttaatctagtttggtgtttgtgggaattatcttgaatagaagagg |
24210896 |
T |
|
| Q |
201 |
taagctagatgtagcgaattggatttagccacgtaatcagagtttatccattgaagaaatattgaacaccaaac |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24210895 |
taagctagatgtagcgaattggatttagccacgtaatcagagtttatccattgaagaaatattgaacaccaaac |
24210822 |
T |
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