View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_112 (Length: 276)
Name: NF9533A_low_112
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_112 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 32528231 - 32528489
Alignment:
| Q |
12 |
atgaaacaaacaaccgaagatgacactttctagtactaccaaaactgtctcttagctacttttagtactnnnnnnnntgatttagagagagaaatgtgat |
111 |
Q |
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| T |
32528231 |
atgaaacaaacaacctaagatgacactttctagtactaccaaaactgtctcttagctacttttagtactaaaaaaaatgatttagagagagaaatgtgat |
32528330 |
T |
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| Q |
112 |
ctacacaaaagacttgaactacatcttaggattgagtgtgacagaaagaaagttaatatgagagtaactctaggaacagaataaggagagtggagcgaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32528331 |
ctacacaaaagacttgaactacatcttaggattgagtgtgacagaaagaaagttaatatgagagtaactctaggaacaaaataaggagagtggagcgaga |
32528430 |
T |
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| Q |
212 |
actttggcgaaaaatgagtgaatattactctcattcatagttactttagatttgcttgc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528431 |
actttggcgaaaaatgagtgaatattactctcattcatagttactttagatttgcttgc |
32528489 |
T |
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