View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_113 (Length: 276)
Name: NF9533A_low_113
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_113 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 49293973 - 49293874
Alignment:
| Q |
172 |
aagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaagt |
271 |
Q |
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| T |
49293973 |
aagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaagt |
49293874 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 49294124 - 49294033
Alignment:
| Q |
21 |
ataataatggaggcgaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
112 |
Q |
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| T |
49294124 |
ataataatggaggcaaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
49294033 |
T |
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